Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_F19
(567 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0786 - 31992357-31992441,31992632-31992752,31993371-319934... 162 2e-40
06_03_0398 - 20379748-20379820,20379930-20380024,20380127-203802... 127 7e-30
02_02_0198 + 7705868-7706065,7706955-7707052,7707269-7707374,770... 69 3e-12
05_01_0165 - 1139271-1139417,1139549-1139777,1139889-1139992,114... 30 1.5
01_03_0304 - 14838977-14838988,14839291-14840302,14840414-148406... 29 3.4
11_01_0278 - 2068800-2068826,2070001-2070442,2070702-2072047 28 4.5
09_02_0589 + 10969195-10969325,10971135-10971607,10971894-109720... 28 4.5
01_06_0996 + 33667663-33667900,33668019-33668091,33668785-336688... 28 4.5
01_01_0406 + 3059996-3060047,3060804-3060867,3060979-3061054,306... 28 4.5
06_03_1490 + 30497980-30498102,30499034-30500156,30500914-305011... 28 6.0
04_01_0038 + 446314-446787,446829-447350 28 6.0
11_04_0362 + 16787133-16787220,16787630-16788004,16788115-16788839 27 7.9
05_03_0567 - 15544494-15544667,15545171-15545243,15545829-155459... 27 7.9
>01_06_0786 -
31992357-31992441,31992632-31992752,31993371-31993465,
31993595-31993716,31994217-31994354,31994564-31994727,
31994835-31994955,31995049-31995148,31995329-31995412,
31996082-31996143,31996246-31996317,31996447-31996506
Length = 407
Score = 162 bits (394), Expect = 2e-40
Identities = 82/176 (46%), Positives = 106/176 (60%)
Frame = +3
Query: 39 SRFEGVEQGPPIEVFLLNKLFTDDTFKNKVNLGVGAYRDENGKPWVLPVVRKMEKQMAAD 218
S F G+ Q P + + + D KVNLGVGAYR E GKP VL VVR+ E+ + +
Sbjct: 5 SVFAGLAQAPEDPILGVTVAYNKDPSPVKVNLGVGAYRTEEGKPLVLNVVRRAEQMLINN 64
Query: 219 ETLLHEYLPVLGMEQFSAASVSMLLGEDNPAIATGRAFGVQTLSGTGSLRVGAEFLNKHL 398
+ + EYLP+ G+ F+ S ++ G D+PAI R VQ LSGTGSLRVG EFL +H
Sbjct: 65 PSRVKEYLPITGLADFNKLSAKLIFGADSPAIQENRVATVQCLSGTGSLRVGGEFLARHY 124
Query: 399 KYDTFYYSSPTWENHHLVFVNSGFTKPRTYRYWNAKTRSIDFNGLIEDLKNAPENA 566
T Y PTW NH VF +G T R+YRY++ TR +DF GL+EDL +AP A
Sbjct: 125 HERTIYIPQPTWGNHPKVFTLAGLT-VRSYRYYDPATRGLDFQGLLEDLGSAPSGA 179
>06_03_0398 -
20379748-20379820,20379930-20380024,20380127-20380222,
20380342-20380501,20380844-20381016,20381102-20381206,
20381460-20381565,20381741-20381947,20383478-20383563,
20383655-20383846
Length = 430
Score = 127 bits (306), Expect = 7e-30
Identities = 67/180 (37%), Positives = 106/180 (58%)
Frame = +3
Query: 27 RKMVSRFEGVEQGPPIEVFLLNKLFTDDTFKNKVNLGVGAYRDENGKPWVLPVVRKMEKQ 206
R M S F VE + + + F D +KVN+GVGAYRD++GKP VL VR+ E++
Sbjct: 27 RSMASWFGHVEPAAKDPILGVTEAFLADPSPDKVNVGVGAYRDDSGKPVVLECVREAERR 86
Query: 207 MAADETLLHEYLPVLGMEQFSAASVSMLLGEDNPAIATGRAFGVQTLSGTGSLRVGAEFL 386
+A + EYLP+ G + S+ + GE+ I R VQ LSGTG+ R+ A+F
Sbjct: 87 IAGSMNM--EYLPMGGSIKMIEESLKLAYGENCEFIKDKRIAAVQALSGTGACRLFADFQ 144
Query: 387 NKHLKYDTFYYSSPTWENHHLVFVNSGFTKPRTYRYWNAKTRSIDFNGLIEDLKNAPENA 566
+ L Y +PTW NHH ++ ++ + +T+ Y++ ++R +DF GL++D+KNAP+ +
Sbjct: 145 KRFLPDSQIYIPTPTWANHHNIWRDAQVPQ-KTFTYYHPESRGLDFAGLMDDIKNAPDGS 203
>02_02_0198 +
7705868-7706065,7706955-7707052,7707269-7707374,
7707636-7707740,7707823-7707995,7708435-7708594,
7708683-7708778,7709349-7709417,7709434-7709528,
7709615-7709687
Length = 390
Score = 68.5 bits (160), Expect = 3e-12
Identities = 29/74 (39%), Positives = 49/74 (66%)
Frame = +3
Query: 345 LSGTGSLRVGAEFLNKHLKYDTFYYSSPTWENHHLVFVNSGFTKPRTYRYWNAKTRSIDF 524
LSGTG+ R+ A+F + L Y +PTW NHH ++ ++ + RT+ Y++ ++R +DF
Sbjct: 68 LSGTGACRLFADFQRRFLPNSQIYIPTPTWSNHHNIWRDAQVPQ-RTFTYYHPESRGLDF 126
Query: 525 NGLIEDLKNAPENA 566
GL++D+KNAP +
Sbjct: 127 AGLMDDIKNAPNGS 140
>05_01_0165 -
1139271-1139417,1139549-1139777,1139889-1139992,
1140097-1140639
Length = 340
Score = 29.9 bits (64), Expect = 1.5
Identities = 19/67 (28%), Positives = 31/67 (46%)
Frame = +3
Query: 234 EYLPVLGMEQFSAASVSMLLGEDNPAIATGRAFGVQTLSGTGSLRVGAEFLNKHLKYDTF 413
E L +L M SAA+ + +PA + GR F ++ + +G LNK L T+
Sbjct: 8 ENLTLLPMSSSSAAAAADAAAASSPAASAGRLFTAGLVASWYASNIGVLLLNKFL-LSTY 66
Query: 414 YYSSPTW 434
+ P +
Sbjct: 67 GFRYPVF 73
>01_03_0304 -
14838977-14838988,14839291-14840302,14840414-14840609,
14840795-14841149
Length = 524
Score = 28.7 bits (61), Expect = 3.4
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Frame = -3
Query: 286 IDTDAAENCSIPSTGKYSCSNVSSAAICFSILRTTGNTHGFPFSSLYAPTPKLTLFLNVS 107
I T+ + CSIP+ K C N + +S R T P T + + L +S
Sbjct: 115 ISTNDIDECSIPNDCKGMCHNQAGG---YSCTRCPHGTSFDPAERKCTSTKQHNIVLGIS 171
Query: 106 SVN-SLFSKKT 77
N SLF+K T
Sbjct: 172 HFNRSLFNKIT 182
>11_01_0278 - 2068800-2068826,2070001-2070442,2070702-2072047
Length = 604
Score = 28.3 bits (60), Expect = 4.5
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +3
Query: 300 DNPAIATGRAFGVQTLSGTGSLRVGAEFLNKHLKYD 407
D PA ATG A G ++ T SL V + N +YD
Sbjct: 37 DGPAAATGNAAGGDPITLTPSLSVSSSTSNTIYQYD 72
>09_02_0589 +
10969195-10969325,10971135-10971607,10971894-10972032,
10972645-10972722,10972886-10973055,10973199-10973467,
10973655-10973781,10973964-10974035,10975084-10975273,
10975480-10975879
Length = 682
Score = 28.3 bits (60), Expect = 4.5
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 8/65 (12%)
Frame = +3
Query: 270 AASVSMLLGEDNPAIATGRAFGVQTLSGTGSLRVGAEFL--NKHL--KYDTFY----YSS 425
+ + ++ GE P +A G G +G ++ +G + +++ +YD F+ YSS
Sbjct: 2 SGAAAIATGEGGPLVAVGLGGGNDLHNGDAAVVLGKTWCWASRYPGDQYDRFWWQLGYSS 61
Query: 426 PTWEN 440
PTW+N
Sbjct: 62 PTWKN 66
>01_06_0996 +
33667663-33667900,33668019-33668091,33668785-33668841,
33668970-33669067,33669482-33669637,33669744-33670366,
33670484-33670560,33671551-33671805,33671950-33672067,
33672174-33672345,33672434-33672975
Length = 802
Score = 28.3 bits (60), Expect = 4.5
Identities = 25/93 (26%), Positives = 37/93 (39%), Gaps = 4/93 (4%)
Frame = +3
Query: 126 VNLGVGAYRDENGKPWVLPVVRKMEKQMAADETLLHEYLPVLGMEQFSAASVSMLLGEDN 305
+NLG +N PWV+ V + L + ++G +S S L G
Sbjct: 374 MNLGPAPQVVQNTAPWVITVAASKIDRSFPTVITLGDKRQIVGQSLYSQGKNSSLSGFRR 433
Query: 306 PAIATGRAFGVQTLSGT---GSLRVGAEF-LNK 392
+ G L+GT GS+ + A F LNK
Sbjct: 434 LVVGVGGRCTEDALNGTDVKGSIVLCASFTLNK 466
>01_01_0406 +
3059996-3060047,3060804-3060867,3060979-3061054,
3061142-3061243,3061327-3061542,3061615-3061695,
3062219-3062287,3062789-3062961,3063098-3063182,
3063290-3063491,3063577-3063646,3063956-3064025,
3064138-3064227,3064321-3064389,3064566-3064664,
3064814-3064924
Length = 542
Score = 28.3 bits (60), Expect = 4.5
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = -3
Query: 340 CTPNARPVAIAGLSSPSNIDTDAAENCSIPSTGKYSCSNVSS 215
C AR A++ L ++D + S P G Y C+N S
Sbjct: 3 CRAAARRAAVSALRLVPDLDVEPMLEVSKPGFGDYQCNNAMS 44
>06_03_1490 +
30497980-30498102,30499034-30500156,30500914-30501132,
30501228-30501454,30501810-30501884,30502250-30502321,
30502765-30502863,30502975-30503046,30503131-30503245,
30503455-30503523,30503625-30503952,30504320-30504437,
30504522-30505448
Length = 1188
Score = 27.9 bits (59), Expect = 6.0
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Frame = -3
Query: 271 AENCSIPSTGKYSCSNVSSA---AICFSILRTTGNTHGFPFSSLYAPTPKLTLFLNVSSV 101
AE S+PSTG+++ + A + F+ G HG P SS+ P P+ L L+
Sbjct: 464 AEGISLPSTGQFAENPTGPAPHPSAGFTSRAMPGQHHGMPPSSM-KPPPQRPLSLDADDA 522
Query: 100 NSLFSKKTSI 71
+K I
Sbjct: 523 VRTEKQKPKI 532
>04_01_0038 + 446314-446787,446829-447350
Length = 331
Score = 27.9 bits (59), Expect = 6.0
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Frame = +3
Query: 159 NGKPWVL---PVVRKMEKQMAADETLLHEYLPVLGMEQFSAASVSMLLGEDNPAIATGRA 329
+ KP VL P++ + E+++A LL P ++ +AAS LL D PA+ +
Sbjct: 11 SSKPIVLLADPLIPEFEQELAPSYRLL----PAADADEAAAASARALLTVDLPAVTAAQI 66
Query: 330 FGVQTLSGTGSLRVGAEFLN 389
+ L + G + +N
Sbjct: 67 DALPALELVVASSAGVDHIN 86
>11_04_0362 + 16787133-16787220,16787630-16788004,16788115-16788839
Length = 395
Score = 27.5 bits (58), Expect = 7.9
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 261 QFSAASVSMLLGEDNPAIATGRAFGVQTLSG 353
Q++ +SMLLGED ++ R V L+G
Sbjct: 189 QYTFDKLSMLLGEDGASVVEARPVAVTDLTG 219
>05_03_0567 -
15544494-15544667,15545171-15545243,15545829-15545991,
15546084-15546159,15548266-15548323,15548606-15548634
Length = 190
Score = 27.5 bits (58), Expect = 7.9
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = +1
Query: 151 EMRMESHGCCLSSVRWRNRWQLMK 222
E RM CC+S WR +W K
Sbjct: 85 ENRMIFRRCCMSDTLWRKQWGCFK 108
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,409,200
Number of Sequences: 37544
Number of extensions: 368602
Number of successful extensions: 1135
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1096
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1131
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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