Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_F19
         (567 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8675| Best HMM Match : Aminotran_1_2 (HMM E-Value=0)               150   9e-37
SB_51759| Best HMM Match : No HMM Matches (HMM E-Value=.)              77   1e-14
SB_57277| Best HMM Match : Phage_T7_Capsid (HMM E-Value=6.7)           59   3e-09
SB_33161| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.1  
SB_57975| Best HMM Match : 7tm_1 (HMM E-Value=6.8e-15)                 29   2.0  
SB_22194| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_55330| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_151| Best HMM Match : zf-CCHC (HMM E-Value=8.9e-05)                 29   3.5  
SB_57001| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.6  
SB_53562| Best HMM Match : Exo_endo_phos (HMM E-Value=0.018)           28   4.6  
SB_9116| Best HMM Match : Methyltransf_4 (HMM E-Value=0)               28   6.1  
SB_11594| Best HMM Match : F5_F8_type_C (HMM E-Value=4.4e-35)          28   6.1  
SB_24504| Best HMM Match : INCENP_ARK-bind (HMM E-Value=9.9)           27   8.1  
SB_8760| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.1  

>SB_8675| Best HMM Match : Aminotran_1_2 (HMM E-Value=0)
          Length = 512

 Score =  150 bits (363), Expect = 9e-37
 Identities = 74/143 (51%), Positives = 96/143 (67%), Gaps = 3/143 (2%)
 Frame = +3

Query: 147 YRDENGKPWVLPVVRKMEKQMA---ADETLLHEYLPVLGMEQFSAASVSMLLGEDNPAIA 317
           YRD +GKPWVLPVV K+E Q+A   AD TL HEYL + G+ QFS A+  +LLG D+PAIA
Sbjct: 106 YRDNDGKPWVLPVVSKVETQLAQGIADGTLNHEYLGIDGLRQFSDAACKLLLGGDHPAIA 165

Query: 318 TGRAFGVQTLSGTGSLRVGAEFLNKHLKYDTFYYSSPTWENHHLVFVNSGFTKPRTYRYW 497
             R  G+Q++SGTGS+ +G +FL +     T Y S PTW NH       GFT  R YRY+
Sbjct: 166 QNRVCGIQSISGTGSVFLGLKFLYQFYNCKTAYISKPTWGNHLKTLKAVGFTDIREYRYY 225

Query: 498 NAKTRSIDFNGLIEDLKNAPENA 566
            A+T S+DF+ + EDL+ APE +
Sbjct: 226 KAETCSVDFDAMWEDLEKAPEGS 248



 Score = 97.9 bits (233), Expect = 5e-21
 Identities = 51/97 (52%), Positives = 64/97 (65%), Gaps = 3/97 (3%)
 Frame = +3

Query: 45  FEGVEQGPPIEVFLLNKLFTDDTFKNKVNLGVGAYRDENGKPWVLPVVRKMEKQMA---A 215
           F+ V   P   VF +   +  D   +K+NLGVGAYRD +GKPWVLPVV K+E Q+A   A
Sbjct: 7   FKDVPLVPTDHVFHVMACYNKDKDPSKINLGVGAYRDNDGKPWVLPVVSKVETQLAQGIA 66

Query: 216 DETLLHEYLPVLGMEQFSAASVSMLLGEDNPAIATGR 326
           D TL HEYL + G+ QFS A+  +LLG D+PAIA  R
Sbjct: 67  DGTLNHEYLGIDGLRQFSDAACKLLLGGDHPAIAQNR 103


>SB_51759| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 64

 Score = 76.6 bits (180), Expect = 1e-14
 Identities = 38/63 (60%), Positives = 46/63 (73%), Gaps = 3/63 (4%)
 Frame = +3

Query: 147 YRDENGKPWVLPVVRKMEKQMA---ADETLLHEYLPVLGMEQFSAASVSMLLGEDNPAIA 317
           YRD +GKPWVLPVV K+E Q+A   AD TL HEYL + G+ QFS A+  +LLG D+PAIA
Sbjct: 2   YRDNDGKPWVLPVVSKVETQLAQGIADGTLNHEYLGIDGLRQFSDAACKLLLGGDHPAIA 61

Query: 318 TGR 326
             R
Sbjct: 62  QNR 64


>SB_57277| Best HMM Match : Phage_T7_Capsid (HMM E-Value=6.7)
          Length = 130

 Score = 58.8 bits (136), Expect = 3e-09
 Identities = 27/55 (49%), Positives = 37/55 (67%)
 Frame = +3

Query: 30  KMVSRFEGVEQGPPIEVFLLNKLFTDDTFKNKVNLGVGAYRDENGKPWVLPVVRK 194
           ++ S +  VE GPP  +  + + F  DT   K+NLGVGAYRD+ GKP+VLP V+K
Sbjct: 47  RLSSWWSHVEAGPPDAILGVTEAFKRDTNPKKMNLGVGAYRDDTGKPYVLPSVKK 101


>SB_33161| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 78

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 14/43 (32%), Positives = 26/43 (60%)
 Frame = +3

Query: 396 LKYDTFYYSSPTWENHHLVFVNSGFTKPRTYRYWNAKTRSIDF 524
           +K  T++YS+PT + + L F  + F +P+T     +K R++ F
Sbjct: 34  IKGITWHYSNPTIKCNRLSFTRTFFYQPKTVYVSGSKPRALGF 76


>SB_57975| Best HMM Match : 7tm_1 (HMM E-Value=6.8e-15)
          Length = 256

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 21/60 (35%), Positives = 30/60 (50%)
 Frame = -3

Query: 247 TGKYSCSNVSSAAICFSILRTTGNTHGFPFSSLYAPTPKLTLFLNVSSVNSLFSKKTSIG 68
           T  YS ++V S A+C S +RTT N      ++    T  LTL     +  ++ SKKT  G
Sbjct: 7   TQDYSLTSVISEAVCISHMRTTTNFLLLNVAASDIVTLLLTLLHVGVAAAAITSKKTPSG 66


>SB_22194| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 546

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 23/102 (22%), Positives = 48/102 (47%)
 Frame = -3

Query: 358 PVPDRVCTPNARPVAIAGLSSPSNIDTDAAENCSIPSTGKYSCSNVSSAAICFSILRTTG 179
           P+P+++  P+A   +I+    P ++    A++ S  S  K+   ++ ++      + TT 
Sbjct: 124 PIPEQISQPDAPIQSISTTQIPEHLSQPLADSISNTSVSKHLSHSMMAS------INTTV 177

Query: 178 NTHGFPFSSLYAPTPKLTLFLNVSSVNSLFSKKTSIGGPCST 53
           ++    F      T  L  F++ SSV S  +  + +  PCS+
Sbjct: 178 DSTQPSFCMTGHSTEPLATFISASSVPS--THPSLLVAPCSS 217


>SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3112

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 33/128 (25%), Positives = 50/128 (39%), Gaps = 3/128 (2%)
 Frame = -3

Query: 409  VSYFKCLLRNSAPTLRLPVPDRVCTPNARPVAIAGLSSPSNIDTDAAENCSIPSTGKYSC 230
            +S  + +  + A T+ +     V T   R V+  G SSP+   +     CS P+  K   
Sbjct: 1637 ISPARVIANSGASTVNITGTGFVDTGYIRCVSDVGFSSPATFISSTDVQCSFPNRQKSKA 1696

Query: 229  SNVSSAAICFSILRTTGNTH-GFPFSSLYAPTPKLTLFL-NVSSVNSLFSK-KTSIGGPC 59
              V S ++        GN    F F  +  PTP    F  N+ ++    SK   S  G  
Sbjct: 1697 MKV-SVSMGQQDTEILGNRFANFEF-YVQGPTPVSAAFTNNLQAILVTMSKPSVSSSGEA 1754

Query: 58   STPSKRET 35
             TP   +T
Sbjct: 1755 CTPLFTDT 1762


>SB_55330| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 68

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 210 PSVSPSYGRQATPMAFHSHLYMHQH 136
           PS SPS   ++TP + H H + H H
Sbjct: 43  PSSSPSSSSRSTPSSDHDHHHHHHH 67


>SB_151| Best HMM Match : zf-CCHC (HMM E-Value=8.9e-05)
          Length = 1382

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 6/84 (7%)
 Frame = +3

Query: 69   PIEVFLLNKLFTDDTFKNKVNLGVGAYRDENGKPWVLPVVRKMEKQMAA------DETLL 230
            PI++  +N+   DD   N+V+L    Y+D+     +    RK + +         D+TLL
Sbjct: 1206 PIDILAINETKLDDVSDNEVHL--SGYKDKQALKLMESSCRKEDNRYIVGLPWKQDKTLL 1263

Query: 231  HEYLPVLGMEQFSAASVSMLLGED 302
            H+  P L  ++  +    +L  +D
Sbjct: 1264 HDNRP-LAEQRLKSLEKGLLKNQD 1286


>SB_57001| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1487

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +1

Query: 307 QRLLQDVHSVYKLYPALEVSGWER 378
           QR LQ +HSV+ ++PA +  G E+
Sbjct: 218 QRQLQRIHSVFSVFPAQQEEGIEK 241


>SB_53562| Best HMM Match : Exo_endo_phos (HMM E-Value=0.018)
          Length = 721

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 18/54 (33%), Positives = 25/54 (46%)
 Frame = +2

Query: 329 IRCTNSIRHWKSQGGSGISQQTFKIRHLLLLQSNLGKSSLGLCELRFHEASHLP 490
           ++ TN  R WK        Q  F+  HLLLL  +    ++G C+ R    S LP
Sbjct: 410 LKNTNIGRWWKEVKNLSEDQSIFRRSHLLLLSVD----TIGRCKYRSARHSRLP 459


>SB_9116| Best HMM Match : Methyltransf_4 (HMM E-Value=0)
          Length = 301

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = +3

Query: 153 DENGKPW--VLPVVRKMEKQMAADETLLHEYLPVLGME 260
           DENG+P   +   VR+  +     E  L  Y PV+G+E
Sbjct: 11  DENGRPLRRIRSFVRRQGRLTKGQEHALENYWPVMGVE 48


>SB_11594| Best HMM Match : F5_F8_type_C (HMM E-Value=4.4e-35)
          Length = 1814

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 27/112 (24%), Positives = 43/112 (38%)
 Frame = +3

Query: 192  KMEKQMAADETLLHEYLPVLGMEQFSAASVSMLLGEDNPAIATGRAFGVQTLSGTGSLRV 371
            +  K+   D  +L +Y+ +    Q S AS+ +   E       G  F   TLS  G +R 
Sbjct: 1405 EFRKRFFCDPPILGKYVSI---HQASMASLYLCAVELQALQPPGYMFIKNTLSTDGPVRY 1461

Query: 372  GAEFLNKHLKYDTFYYSSPTWENHHLVFVNSGFTKPRTYRYWNAKTRSIDFN 527
              +++       +F Y        HL   +SGF    T  +  A  R   +N
Sbjct: 1462 STDYVTPRKTCLSFVYQLKGVYPGHLNVYSSGFKGQETLLWRLAGNRGDGWN 1513


>SB_24504| Best HMM Match : INCENP_ARK-bind (HMM E-Value=9.9)
          Length = 190

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 15/53 (28%), Positives = 22/53 (41%)
 Frame = -3

Query: 376 APTLRLPVPDRVCTPNARPVAIAGLSSPSNIDTDAAENCSIPSTGKYSCSNVS 218
           +P  +LP PD +     RP  +A     + ID D       P+   YS   +S
Sbjct: 48  SPESKLPSPDTLFATVGRPSFLATTKEENTIDWDVISKRCEPNMSVYSAPPMS 100


>SB_8760| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 874

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 18/66 (27%), Positives = 25/66 (37%)
 Frame = -3

Query: 331 NARPVAIAGLSSPSNIDTDAAENCSIPSTGKYSCSNVSSAAICFSILRTTGNTHGFPFSS 152
           N  P    GLS   N   D  +       G  SCS +S A+  F   R   N +   +  
Sbjct: 120 NGSPQEHEGLSPQENTPEDELQYSGSSEDGSGSCSYISQAS-AFHSGRAARNHYQLQYHD 178

Query: 151 LYAPTP 134
           ++ P P
Sbjct: 179 VWNPYP 184


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,966,039
Number of Sequences: 59808
Number of extensions: 426663
Number of successful extensions: 1216
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1096
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1211
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1337207630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)