Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_F19
         (567 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    24   0.93 
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    23   2.8  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   2.8  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   2.8  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    23   2.8  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   6.5  

>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 24.2 bits (50), Expect = 0.93
 Identities = 17/75 (22%), Positives = 34/75 (45%)
 Frame = -3

Query: 316 AIAGLSSPSNIDTDAAENCSIPSTGKYSCSNVSSAAICFSILRTTGNTHGFPFSSLYAPT 137
           A+  L S +  + +  ++  I  T   SC+++ S  + FS++    +    P + + A  
Sbjct: 350 ALVALGSYNKFNNNVYKDALIVCTVN-SCTSMLSGIVIFSVVGFMAHEQQKPVADVAASG 408

Query: 136 PKLTLFLNVSSVNSL 92
           P L   +  S+V  L
Sbjct: 409 PGLAFLVYPSAVLEL 423


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +3

Query: 303 NPAIATGRAFGVQTLSGTGSLRVGAEFLNKHLKYDTFY 416
           +P +A  +  GV+TLS      VG+EF+      DTF+
Sbjct: 69  DPRLAFKKRTGVETLS------VGSEFIKNIWVPDTFF 100


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +3

Query: 303 NPAIATGRAFGVQTLSGTGSLRVGAEFLNKHLKYDTFY 416
           +P +A  +  GV+TLS      VG+EF+      DTF+
Sbjct: 69  DPRLAFKKRTGVETLS------VGSEFIKNIWVPDTFF 100


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 16/75 (21%), Positives = 33/75 (44%)
 Frame = -3

Query: 316 AIAGLSSPSNIDTDAAENCSIPSTGKYSCSNVSSAAICFSILRTTGNTHGFPFSSLYAPT 137
           A+  L S +  + +  ++  I  T   SC+++ S  + FS++    +    P + +    
Sbjct: 297 ALVALGSYNKFNNNVYKDALIVCTVN-SCTSMLSGIVIFSVVGFMAHEQQKPVADVAVSG 355

Query: 136 PKLTLFLNVSSVNSL 92
           P L   +  S+V  L
Sbjct: 356 PGLAFLVYPSAVLEL 370


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +3

Query: 303 NPAIATGRAFGVQTLSGTGSLRVGAEFLNKHLKYDTFY 416
           +P +A  +  GV+TLS      VG+EF+      DTF+
Sbjct: 8   DPRLAFKKRTGVETLS------VGSEFIKNIWVPDTFF 39


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
 Frame = +3

Query: 375 AEFLNKHLKYDTFY--YSSPTWENHHLVFVNSGFTKPRTYRYWNAKTRSIDFN 527
           A F++  +  D  Y   +SP   N  L  +   F+  ++ +Y+      ++FN
Sbjct: 7   ALFISLIILNDEIYNIIASPQLNNPTLFMIGGVFSNNKSKKYFEQTLNELNFN 59


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,873
Number of Sequences: 438
Number of extensions: 3701
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16440594
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)