Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_F18
         (441 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.03c |mug183||histone chaperone Rtt106-like|Schizosacchar...    29   0.32 
SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    29   0.32 
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    26   2.2  
SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomy...    26   3.0  
SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3 s...    25   3.9  
SPAC11H11.02c |mug162||sequence orphan|Schizosaccharomyces pombe...    25   5.2  
SPCC188.06c |srp54||signal recognition particle subunit Srp54|Sc...    25   5.2  
SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MB...    25   5.2  
SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces po...    25   6.8  
SPAC24B11.11c |sid2||Sid2p-Mob1p kinase complex|Schizosaccharomy...    25   6.8  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    24   9.0  
SPCC1020.09 |||WD repeat protein, human WDR79 family|Schizosacch...    24   9.0  
SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces pomb...    24   9.0  
SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr ...    24   9.0  

>SPAC6G9.03c |mug183||histone chaperone
           Rtt106-like|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 352

 Score = 29.1 bits (62), Expect = 0.32
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = -2

Query: 227 CTTAYDIFNEYFRFV--*TCMTKYKHFSCP 144
           CT ++DIF +YF F+   T     + F CP
Sbjct: 161 CTNSWDIFRDYFEFIGTSTLSPSVEEFVCP 190


>SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 103

 Score = 29.1 bits (62), Expect = 0.32
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +3

Query: 84  RSNQMLNIARLLPFIYIYINWTRKMFVFC 170
           R  QM  I +LLPFI+IY++   K+  +C
Sbjct: 5   RCKQM--IPKLLPFIFIYLSVANKIMFYC 31


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 2386

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = -1

Query: 366  RICHAANKMIRILEYINIPNI 304
            R+CH  NK+ +ILE+I I N+
Sbjct: 1906 RVCHPNNKVYKILEHI-IANV 1925


>SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
 Frame = +1

Query: 334 TYHFICSMTNAPRF-NVIIATVYMCAMSYIYVC 429
           T HFICS T  P +     A + +  + Y+  C
Sbjct: 210 TTHFICSSTGGPEYEKAKAANIPILGLDYLLKC 242


>SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3
           subunit Alp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 821

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 337 YHFICSMTNAPRFNVIIATVYMCA 408
           Y+F CS++N  R NV I+T  + A
Sbjct: 736 YNFSCSLSNRIRINVPISTDALAA 759


>SPAC11H11.02c |mug162||sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 264

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 107 CSIVTVYIYIYKLDKKNVCILSY 175
           C I+   I+IY ++KKN   LSY
Sbjct: 233 CLIIFPSIWIYAIEKKNFKNLSY 255


>SPCC188.06c |srp54||signal recognition particle subunit
           Srp54|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 522

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 10/33 (30%), Positives = 22/33 (66%)
 Frame = +3

Query: 15  KSLYIVITQYK*EINTDNYIVTERSNQMLNIAR 113
           + LYIV +  + E+++D  +  E+ +++L +AR
Sbjct: 372 RMLYIVDSMTEQELDSDGLLFVEQPSRVLRVAR 404


>SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MBOAT
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 588

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 8/21 (38%), Positives = 16/21 (76%)
 Frame = -3

Query: 160 NIFLVQFIYIYINGNNRAIFN 98
           N +L+++IY+ + G+N +I N
Sbjct: 436 NRWLIRYIYVPLGGSNHSILN 456


>SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 562

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +2

Query: 221 LYIDKRYLVITSVKSTLFFFSLNPLISVILGIFMYSNIRIIL 346
           LY+   Y+ I  V +  F+  + P   ++  IFM S   II+
Sbjct: 325 LYLPDSYIPIHPVVAYAFYVWILPAFRILFSIFMASMSVIIV 366


>SPAC24B11.11c |sid2||Sid2p-Mob1p kinase complex|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 607

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 6/17 (35%), Positives = 15/17 (88%)
 Frame = -1

Query: 408 GTHIHSSYNNVKSWRIC 358
           G++++ +++N+K+WR C
Sbjct: 445 GSNVNETWSNLKNWRKC 461


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
            Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = -1

Query: 372  SWRICHAANKMIRIL-EYINIPNITLIRGFKEKKNKVLFTLVITKYRLSM 226
            S +IC     ++  L EY N P++TL     + KN   F  V  K  L M
Sbjct: 1030 SKKICENRFPVVEGLQEYCNSPDVTLFSVLCQMKNHRNFVYVKEKISLIM 1079


>SPCC1020.09 |||WD repeat protein, human WDR79
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 399

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +2

Query: 254 SVKSTLFFFSLNPLISVILGIFMYSN 331
           S+K     FSLNP+ S  L +  YSN
Sbjct: 207 SLKGIQSCFSLNPMDSKTLAVGTYSN 232


>SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = +2

Query: 107 CSIVTVYIYIYKLDKK 154
           C++  VY ++YKLD++
Sbjct: 238 CAMFIVYSFVYKLDRR 253


>SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 495

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = +2

Query: 284 LNPLISVILGIFMYS 328
           LNP+IS IL I++YS
Sbjct: 8   LNPIISKILEIYVYS 22


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,898,229
Number of Sequences: 5004
Number of extensions: 41721
Number of successful extensions: 123
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)