Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_F18
         (441 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19633| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.7  
SB_22334| Best HMM Match : VAR1 (HMM E-Value=1.9)                      29   2.2  
SB_26061| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.0  
SB_8814| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   3.9  
SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)              27   5.2  
SB_43504| Best HMM Match : Urotensin_II (HMM E-Value=0.05)             27   5.2  
SB_38071| Best HMM Match : ABC_membrane (HMM E-Value=1.2e-11)          27   5.2  
SB_31499| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.2  
SB_10090| Best HMM Match : 7tm_1 (HMM E-Value=0)                       27   9.1  
SB_1652| Best HMM Match : Keratin_B2 (HMM E-Value=0.031)               27   9.1  

>SB_19633| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 93

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 15/65 (23%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
 Frame = -1

Query: 195 FSLRINMYDKIQTFFLSNLYIYI*TVTIEQYLTFDYSFL*QYNYQCLFL-IYIA*SQYIK 19
           F + I +Y  I  +    +Y Y  T T     T+ Y++   Y Y  +++ +Y+    Y+ 
Sbjct: 9   FYIYIYIYIYIYIYIYIYIYTYTYTYTYTYTYTYTYTYTYTYTYTYVYVYVYVYVYVYVY 68

Query: 18  IYLKI 4
           +Y+ +
Sbjct: 69  VYVYV 73



 Score = 27.9 bits (59), Expect = 3.9
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +1

Query: 319 YVFQYTYHFICSMTNAPRFNVIIATVYMCAMSYIYVCVCV 438
           Y + YTY +  + T    +  +   VY+    Y+YV V V
Sbjct: 34  YTYTYTYTYTYTYTYTYTYTYVYVYVYVYVYVYVYVYVYV 73



 Score = 27.1 bits (57), Expect = 6.9
 Identities = 14/63 (22%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
 Frame = -1

Query: 189 LRINMYDKIQTFFLSNLYIYI*TVTIEQYLTFDYSFL*QYNYQCLF-LIYIA*SQYIKIY 13
           +++  Y  I  +    +YIYI   T     T+ Y++   Y Y   +   Y+    Y+ +Y
Sbjct: 5   IQVTFYIYIYIYIYIYIYIYIYIYTYTYTYTYTYTYTYTYTYTYTYTYTYVYVYVYVYVY 64

Query: 12  LKI 4
           + +
Sbjct: 65  VYV 67



 Score = 26.6 bits (56), Expect = 9.1
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = +1

Query: 316 IYVFQYTYHFICSMTNAPRFNVIIATVYMCAMSYIYVCVCV 438
           IY++ YTY +  + T    +       Y     Y+YV V V
Sbjct: 25  IYIYTYTYTYTYTYTYTYTYTYTYTYTYTYVYVYVYVYVYV 65



 Score = 26.6 bits (56), Expect = 9.1
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +1

Query: 319 YVFQYTYHFICSMTNAPRFNVIIATVYMCAMSYIYVCVCV 438
           Y + YTY +  + T    +  +   VY+    Y+YV V V
Sbjct: 36  YTYTYTYTYTYTYTYTYTYVYVYVYVYVYVYVYVYVYVYV 75


>SB_22334| Best HMM Match : VAR1 (HMM E-Value=1.9)
          Length = 525

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -1

Query: 369 WRICHAANKMIRILEYINIP 310
           WR CH ANK I     +NIP
Sbjct: 45  WRTCHGANKNITKQRRVNIP 64


>SB_26061| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 86

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -1

Query: 441 THTHTHIYIRHGTHIHSS 388
           TH H H++ R  TH+H++
Sbjct: 16  THNHAHVHARTNTHMHAN 33



 Score = 26.6 bits (56), Expect = 9.1
 Identities = 15/58 (25%), Positives = 27/58 (46%)
 Frame = -1

Query: 435 THTHIYIRHGTHIHSSYNNVKSWRICHAANKMIRILEYINIPNITLIRGFKEKKNKVL 262
           T+THI   +  H+H+  N        HA ++ +    Y++    T  +GF+ +K   L
Sbjct: 10  TYTHILTHNHAHVHARTNT-----HMHANSRRLHANIYVSQLTSTYEKGFRRRKTDEL 62


>SB_8814| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 824

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -1

Query: 435 THTHIYIRHGTHIHSSYNN 379
           THTH   RH TH+H ++ +
Sbjct: 438 THTHETTRHDTHLHDTHTH 456



 Score = 27.9 bits (59), Expect = 3.9
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -1

Query: 435 THTHIYIRHGTHIHSSYNN 379
           THTH   RH TH+H ++ +
Sbjct: 453 THTHETTRHDTHLHDTHTH 471



 Score = 27.9 bits (59), Expect = 3.9
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -1

Query: 435 THTHIYIRHGTHIHSSYNN 379
           THTH   RH TH+H ++ +
Sbjct: 468 THTHETTRHDTHLHDTHTH 486



 Score = 27.1 bits (57), Expect = 6.9
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 435 THTHIYIRHGTHIHSSYNN 379
           THTH   RH TH+H  + +
Sbjct: 498 THTHETTRHDTHLHDMHTH 516



 Score = 26.6 bits (56), Expect = 9.1
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -1

Query: 435 THTHIYIRHGTHIHSSY 385
           THTH   RH TH+H ++
Sbjct: 408 THTHETPRHDTHLHDTH 424


>SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)
          Length = 972

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 13/39 (33%), Positives = 15/39 (38%)
 Frame = +3

Query: 321 CIPIYVSFYLQHDKCATI*RYYSYCVYVCHVLYICVCVC 437
           C   Y  +Y  +  C     YY YC Y  H  Y C   C
Sbjct: 482 CYCYYYCYYYCYCYCYYC-CYYCYCYYYYHHYYCCYYCC 519



 Score = 26.6 bits (56), Expect = 9.1
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +3

Query: 384 YSYCVYVCHVLYICVCVC 437
           Y YC Y C+  Y C C C
Sbjct: 481 YCYCYYYCY--YYCYCYC 496


>SB_43504| Best HMM Match : Urotensin_II (HMM E-Value=0.05)
          Length = 444

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = -2

Query: 278 KKIKYFSH**LLNIVCLCTTAYDIFNEYFRFV*T--CMTKY 162
           K I+Y S    +N  C   + YD  N Y R+V T  C ++Y
Sbjct: 33  KNIRYVSTYDCMNGYCRYVSTYDCMNGYCRYVSTYDCYSRY 73


>SB_38071| Best HMM Match : ABC_membrane (HMM E-Value=1.2e-11)
          Length = 1214

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +3

Query: 363 CATI*RYYSYCVYVCHVLYICVCVC 437
           CA + R  S CV  C VL  C+  C
Sbjct: 255 CAVLYRVVSCCVVSCRVLSCCIVSC 279


>SB_31499| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 260

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 4/94 (4%)
 Frame = -1

Query: 399 IHSSYNNVKSWRICHAA-NKMIRILEYINIPNITLIRGFKEKKNKVLFTLVITKYRLSMY 223
           +H  Y+ +++  I      +   I+E I +  ++L RG+   K        IT  RLS Y
Sbjct: 156 LHRGYHYIEAIAISRLLLYRGYHIIEAITLSRLSLYRGYHYIK-------AITISRLSQY 208

Query: 222 NGL*YF**IFSLRINM---YDKIQTFFLSNLYIY 130
            G  YF  I   R+++   Y  I+   +S L +Y
Sbjct: 209 RGYHYFEAITIPRLSLYRGYRYIEAIAISRLSLY 242


>SB_10090| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 419

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +1

Query: 313 NIYVFQYTYHFICSMTNAPRFNVIIATVYMCAMSYIYV 426
           N+YVFQ    F C  T   ++ + +  +++C  ++I V
Sbjct: 249 NVYVFQ-PGKFFCYQTATVQYTIPLMGIFICIPTFIIV 285


>SB_1652| Best HMM Match : Keratin_B2 (HMM E-Value=0.031)
          Length = 563

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 363 CATI*RYYSYCVYVCHVLYICVCVC 437
           C  + R   YCV +C V+  CV +C
Sbjct: 437 CVVLCRVVLYCVKLCCVVLHCVVLC 461


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,356,585
Number of Sequences: 59808
Number of extensions: 283719
Number of successful extensions: 746
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 859323430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)