Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_F18
         (441 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110487-6|CAB54433.2|  472|Caenorhabditis elegans Hypothetical ...    31   0.28 
AF099922-1|AAK21410.2|  509|Caenorhabditis elegans Hypothetical ...    29   1.1  
Z81015-2|CAB02660.1|  411|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z72502-2|CAA96588.1|  423|Caenorhabditis elegans Hypothetical pr...    27   8.0  

>AL110487-6|CAB54433.2|  472|Caenorhabditis elegans Hypothetical
           protein Y39E4B.7 protein.
          Length = 472

 Score = 31.5 bits (68), Expect = 0.28
 Identities = 16/60 (26%), Positives = 31/60 (51%)
 Frame = +1

Query: 262 KYFIFFLLKSPN*CYIRNIYVFQYTYHFICSMTNAPRFNVIIATVYMCAMSYIYVCVCVC 441
           +YF FFL        I  +YVF   + ++ S ++    + I++  Y+CA+  + +C  +C
Sbjct: 146 RYFFFFLCSLS----IHMMYVFFLCFAYVWSGSDTNARDHILSPPYLCAIVLLALCAVLC 201


>AF099922-1|AAK21410.2|  509|Caenorhabditis elegans Hypothetical
           protein F56F11.5 protein.
          Length = 509

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = -1

Query: 180 NMYDKIQTFFLSNLYIYI*TVTIEQYLTF 94
           +++D+IQ FF  NL I I T+ +E Y +F
Sbjct: 63  SIFDEIQNFFFLNLNIEIKTLFLEDYPSF 91


>Z81015-2|CAB02660.1|  411|Caenorhabditis elegans Hypothetical
           protein C11E4.3 protein.
          Length = 411

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +1

Query: 400 MCAMSYIYVCVCVC 441
           +C   Y+YVCVCVC
Sbjct: 375 VCFRFYVYVCVCVC 388


>Z72502-2|CAA96588.1|  423|Caenorhabditis elegans Hypothetical
           protein C08B6.5 protein.
          Length = 423

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
 Frame = -1

Query: 381 NVKSWRICHAANK-MIRILEYINIPNITLIRGFKEKKNKVLFTLVITKYRLSM 226
           ++ + ++C   NK +++IL    I +ITL  G+  KK     T+ + K RLS+
Sbjct: 312 SISNRKLCQMFNKALLKILP--GIASITLGPGYGTKKQPEDITVQVKKTRLSL 362


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,323,636
Number of Sequences: 27780
Number of extensions: 230194
Number of successful extensions: 575
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 573
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 756625558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)