Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_F18
         (441 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g60160.1 68416.m06717 ABC transporter family protein similar ...    30   0.60 
At5g43570.1 68418.m05327 serine protease inhibitor, potato inhib...    29   1.8  
At3g60970.1 68416.m06823 ABC transporter family protein ABC tran...    28   2.4  
At3g13090.1 68416.m01639 ABC transporter, putative similar to MR...    28   3.2  
At3g06460.1 68416.m00748 GNS1/SUR4 membrane family protein simil...    27   4.2  
At1g30560.1 68414.m03739 transporter, putative similar to glycer...    27   4.2  

>At3g60160.1 68416.m06717 ABC transporter family protein similar to
            ATP-binding cassette transporter MRP8 GI:18031899 from
            [Arabidopsis thaliana]
          Length = 1490

 Score = 30.3 bits (65), Expect = 0.60
 Identities = 14/24 (58%), Positives = 17/24 (70%), Gaps = 3/24 (12%)
 Frame = -1

Query: 369  WRICHAANKMI---RILEYINIPN 307
            W IC+A NKMI   RIL+Y  IP+
Sbjct: 1195 WNICNAENKMISVERILQYSKIPS 1218


>At5g43570.1 68418.m05327 serine protease inhibitor, potato
           inhibitor I-type family protein similar to SP|P24076 Glu
           S.griseus protease inhibitor (BGIA) {Momordica
           charantia}; contains Pfam profile PF00280: Potato
           inhibitor I family
          Length = 91

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +1

Query: 376 NVIIATVYMCAMSYIYVCVCVC 441
           N+I+  +Y+    YIY+CVCVC
Sbjct: 66  NLIVIYIYI----YIYICVCVC 83


>At3g60970.1 68416.m06823 ABC transporter family protein ABC
           transporter-like proteins
          Length = 1037

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 13/24 (54%), Positives = 17/24 (70%), Gaps = 3/24 (12%)
 Frame = -1

Query: 369 WRICHAANKMI---RILEYINIPN 307
           W IC+A NKMI   RIL++  IP+
Sbjct: 742 WNICNAENKMISVERILQHSKIPS 765


>At3g13090.1 68416.m01639 ABC transporter, putative similar to
            MRP-like ABC transporter [Arabidopsis thaliana]
            GI:2316016; contains Pfam profile: PF00005 ABC
            transporter
          Length = 1466

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 3/24 (12%)
 Frame = -1

Query: 369  WRICHAANKMI---RILEYINIPN 307
            W +C   NKMI   R+L+Y NIP+
Sbjct: 1175 WTLCDLENKMISVERMLQYTNIPS 1198


>At3g06460.1 68416.m00748 GNS1/SUR4 membrane family protein similar
           to SP|P25358 Elongation of fatty acids protein 2 (GNS1
           protein) (V-SNARE bypass mutant gene 2 protein)
           {Saccharomyces cerevisiae}; contains Pfam profile
           PF01151: GNS1/SUR4 family
          Length = 298

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 7/34 (20%), Positives = 20/34 (58%)
 Frame = +1

Query: 316 IYVFQYTYHFICSMTNAPRFNVIIATVYMCAMSY 417
           ++V  Y Y+F+C++ + P++  ++    M   ++
Sbjct: 183 VHVIMYGYYFLCAIGSRPKWKKLVTNFQMVQFAF 216


>At1g30560.1 68414.m03739 transporter, putative similar to
           glycerol-3-phosphate transporter (glycerol 3-phosphate
           permease) [Homo sapiens] GI:7543982
          Length = 510

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -3

Query: 235 FVYVQRPMIFLMNIFASYKHV*QNTNIFLVQFIYIYING 119
           F+Y+  P +FL  I   Y HV    NI L+    +++NG
Sbjct: 365 FIYLTIPALFLYRI---YGHVSMTINIILMFVAGLFVNG 400


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,011,491
Number of Sequences: 28952
Number of extensions: 179432
Number of successful extensions: 344
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 340
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 702840360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)