Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_F17
(510 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc... 29 0.31
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual 28 0.93
SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ... 27 1.6
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 26 3.8
SPBC16D10.10 |||tRNA specific adenosine deaminase subunit Tad2 |... 25 5.0
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch... 25 6.6
SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces pomb... 25 6.6
SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme Ubc6|Schizosacc... 25 8.7
SPCC1795.02c ||SPCC895.01|CaCA proton/calcium exchanger|Schizosa... 25 8.7
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 25 8.7
>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 997
Score = 29.5 bits (63), Expect = 0.31
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Frame = -3
Query: 352 DDEHLERQTAEGSER*QKPVRKAKATLIPPTLDALE----TCSSCVETFFQYVFSPRSLF 185
+DEHL Q + E ++P+ +T P DA + SS + Q FSPRS
Sbjct: 447 EDEHLNLQGSFIEESTKQPISSKPSTSSPDMTDAATGGRVSSSSFRDKILQTNFSPRSTI 506
Query: 184 DNAVHLER 161
D+ ++ +
Sbjct: 507 DSFSNISK 514
>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1202
Score = 27.9 bits (59), Expect = 0.93
Identities = 19/60 (31%), Positives = 32/60 (53%)
Frame = +2
Query: 80 NDKRLDMLEIDSFVYKLDTGKNNIVRSSLEMHGVIEQRPWTKNILEKGFDTTGTGFKSIE 259
N K L+ + + SFV K+N +++S E+ +IE+ + KN++ F G KS E
Sbjct: 754 NYKSLESIGLTSFV------KDNKLKASKELQKLIEENVFPKNLILFIFRKCVIGIKSFE 807
>SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 797
Score = 27.1 bits (57), Expect = 1.6
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +2
Query: 203 KNILEKGFDTTGTGFKSIESWWYKSRLG 286
KNI + F+TTG G K +E YK G
Sbjct: 106 KNIPKMKFNTTGFGAKMLEKMGYKQGQG 133
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 25.8 bits (54), Expect = 3.8
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +3
Query: 18 TQSFVYLLVPNTIAWAAS*ASMTNALTCSKSIASSINSTL 137
TQS Y +T+ W+ S T+ S+ +++ NST+
Sbjct: 3866 TQSVYYNATSSTVPWSNSTFRNTSNTMTSRFVSNDFNSTI 3905
>SPBC16D10.10 |||tRNA specific adenosine deaminase subunit Tad2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 25.4 bits (53), Expect = 5.0
Identities = 12/52 (23%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = -3
Query: 211 YVFSPRSLFDNAVHLERAADDVVLTSVEFIDEAIDF--EHVKAFVIDAHEAA 62
+V + +D+++H R D++L E ID A+ F +H++ + + ++ +
Sbjct: 152 FVTLSKPAYDSSIHPTRENADIILPQKENIDTALLFVSQHLQDILAEMNKTS 203
>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
3|||Manual
Length = 862
Score = 25.0 bits (52), Expect = 6.6
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -3
Query: 265 PTLDALETCSSCVETFFQYVFSPRSLFDNAVHLER 161
P+LD ETCS+ V FSP ++ N + R
Sbjct: 27 PSLDYFETCSNFVPRAGIPTFSPYAVIKNFDEVNR 61
>SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 782
Score = 25.0 bits (52), Expect = 6.6
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Frame = -1
Query: 477 SLSKG-NPRGIVSK-HTLHRQAYLAFIVDISIDGK-TIPVLTGV 355
+L +G +P+ + K H LH++ Y F +D G+ T P TG+
Sbjct: 280 ALEEGVSPKELCDKYHALHKEVYDWFEIDFDHFGRTTTPKQTGI 323
>SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme
Ubc6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 227
Score = 24.6 bits (51), Expect = 8.7
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +2
Query: 179 VIEQRPWTKNILEKGFDTTGTGFKSIESWWYKSRLGFP 292
+++ +P T+NILE + TG E Y L FP
Sbjct: 24 LVDAKPATENILEWHYIITGPPDTPYEGGQYHGTLIFP 61
>SPCC1795.02c ||SPCC895.01|CaCA proton/calcium
exchanger|Schizosaccharomyces pombe|chr 3|||Manual
Length = 412
Score = 24.6 bits (51), Expect = 8.7
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -1
Query: 216 SNMFLVHGLCSITPCISSELRT 151
SN+ LV G+C +T I E+ T
Sbjct: 154 SNLLLVFGMCLVTTGIRREITT 175
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 24.6 bits (51), Expect = 8.7
Identities = 20/64 (31%), Positives = 30/64 (46%)
Frame = +3
Query: 57 AWAAS*ASMTNALTCSKSIASSINSTLVRTTSSAARSRCTALSNRDRGLKTYWKKVSTQL 236
A ++S A T+ + + ASS N+ L TSS+A T +SN L + +QL
Sbjct: 725 AMSSSSAIPTSVNSSTLITASSSNTLLSSITSSSAIVSSTTVSNISSNLPSATASSQSQL 784
Query: 237 EQVS 248
S
Sbjct: 785 TNSS 788
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,120,289
Number of Sequences: 5004
Number of extensions: 42397
Number of successful extensions: 150
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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