Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_F16
(423 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 1.6
SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces ... 26 2.1
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote... 26 2.8
SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces... 25 3.7
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa... 25 4.8
SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces pombe... 25 6.4
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual 25 6.4
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 24 8.5
SPAC806.03c |rps2601|rps26-1, rps26|40S ribosomal protein S26|Sc... 24 8.5
SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein S26|Schizosa... 24 8.5
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.6 bits (56), Expect = 1.6
Identities = 13/49 (26%), Positives = 22/49 (44%)
Frame = +2
Query: 188 PPATDVSDVSGLGAGVEPHTRVHTARLLPPSCNGMAPIKPVHGPVSQAS 334
PPA+ S + + T T+ +PP+ N P+ P P S ++
Sbjct: 372 PPASTSSTGTSSSPLLSTSTSCTTSTSIPPTGNSTTPVTPTVPPTSSST 420
Score = 26.2 bits (55), Expect = 2.1
Identities = 14/49 (28%), Positives = 21/49 (42%)
Frame = +2
Query: 188 PPATDVSDVSGLGAGVEPHTRVHTARLLPPSCNGMAPIKPVHGPVSQAS 334
PPA+ S + T T+ +PP+ N P+ P P S +S
Sbjct: 318 PPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSS 366
Score = 24.2 bits (50), Expect = 8.5
Identities = 13/49 (26%), Positives = 20/49 (40%)
Frame = +2
Query: 188 PPATDVSDVSGLGAGVEPHTRVHTARLLPPSCNGMAPIKPVHGPVSQAS 334
PP + S + T T+ +PP+ N P+ P P S +S
Sbjct: 264 PPTSTSSTDTNSSPLPTTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSS 312
>SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 878
Score = 26.2 bits (55), Expect = 2.1
Identities = 13/21 (61%), Positives = 14/21 (66%)
Frame = +1
Query: 109 IRTSEMKL*SRLYREGLMKMR 171
IRTSE L L REGL K+R
Sbjct: 87 IRTSEFDLAESLLREGLAKLR 107
>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
Mug36|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1646
Score = 25.8 bits (54), Expect = 2.8
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +3
Query: 111 QDFRDEIMIKAISRRIDENAGELMRHLLQQ 200
QDF DE++ + + ID ++ L+ +LQ+
Sbjct: 151 QDFEDEVINEGLESEIDGSSHNLLDSILQK 180
>SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 25.4 bits (53), Expect = 3.7
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -3
Query: 385 PPPASPVRRTKPQPFSSRSLRYWSMY 308
PPP P+R KP+ + + RY S +
Sbjct: 158 PPPDVPLRPHKPKNAAKKKFRYESKF 183
>SPAC22F8.07c |rtf1||replication termination factor
Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 466
Score = 25.0 bits (52), Expect = 4.8
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 261 RDCCRRAATEWPLLNQYMDQYLKLLEEN 344
RD T W LL+Q +D++LK E N
Sbjct: 94 RDYTNWTPTFWVLLSQLIDEFLKESELN 121
>SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 675
Score = 24.6 bits (51), Expect = 6.4
Identities = 8/26 (30%), Positives = 16/26 (61%)
Frame = +3
Query: 288 EWPLLNQYMDQYLKLLEENGCGFVRR 365
EWP+L + +D+ + +L + C +R
Sbjct: 241 EWPVLKETVDELIDILRYSPCTHQKR 266
>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 1279
Score = 24.6 bits (51), Expect = 6.4
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = +2
Query: 224 GAGVEPHTRVHTARLLPPSCNGMAPIKPVHGPVSQAS*GERL 349
G G++ R ++ P NG + + V GP S G RL
Sbjct: 424 GVGIQDILRKSGCSVILPPINGDSDVVSVRGPALNISEGIRL 465
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 24.2 bits (50), Expect = 8.5
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -1
Query: 219 PLTSDTSVAGGAALTHPH 166
PL DTSV ++ HPH
Sbjct: 142 PLQRDTSVPPAPSMVHPH 159
>SPAC806.03c |rps2601|rps26-1, rps26|40S ribosomal protein
S26|Schizosaccharomyces pombe|chr 1|||Manual
Length = 120
Score = 24.2 bits (50), Expect = 8.5
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +1
Query: 211 RQRPGRRSRTPHPR 252
R R GRR RTP PR
Sbjct: 87 RSREGRRIRTPPPR 100
>SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein
S26|Schizosaccharomyces pombe|chr 1|||Manual
Length = 119
Score = 24.2 bits (50), Expect = 8.5
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +1
Query: 211 RQRPGRRSRTPHPR 252
R R GRR RTP PR
Sbjct: 87 RSREGRRIRTPPPR 100
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,722,185
Number of Sequences: 5004
Number of extensions: 32666
Number of successful extensions: 108
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 150383836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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