Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_F16
(423 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0551 + 4446937-4447353,4449141-4450013,4451206-4451244,445... 31 0.51
11_06_0656 + 25926192-25926289,25927530-25927659,25928248-259282... 29 1.5
03_04_0113 + 17382370-17382714 28 2.7
02_03_0212 - 16460665-16460766,16460971-16461298,16461379-164615... 28 2.7
10_08_0142 - 15169825-15170538 28 3.6
07_03_1775 + 29431106-29431193,29431290-29431329,29431620-294320... 28 3.6
07_03_1021 - 23347426-23347619,23348040-23348145,23348257-23348268 28 3.6
01_06_1038 - 33997124-33997177,33997256-33997318,33997456-339975... 28 3.6
01_05_0386 - 21683909-21685334,21685513-21685541 28 3.6
12_01_1052 + 10821964-10822064,10822434-10822607,10823086-108233... 27 4.7
03_06_0140 + 31951569-31951710,31951943-31952037,31952141-319539... 27 4.7
07_03_0279 + 16211180-16211410,16211516-16211659,16212466-162125... 27 6.2
03_06_0238 - 32570222-32570330,32570538-32570599,32570658-325708... 27 6.2
12_02_0986 + 25055674-25056571,25057741-25057782,25058651-25059888 27 8.2
09_03_0125 - 12531409-12531442,12531577-12531668,12531747-125323... 27 8.2
04_04_0341 + 24521034-24521498 27 8.2
>12_01_0551 +
4446937-4447353,4449141-4450013,4451206-4451244,
4452339-4452581
Length = 523
Score = 30.7 bits (66), Expect = 0.51
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -3
Query: 421 CSAACLQRTTSCP-PPASPVRRTKPQPFSSRSLR 323
CS+A L + CP PP P+ R +P P + +LR
Sbjct: 26 CSSARLSSVSECPPPPPPPLPRPRPPPPAVEALR 59
>11_06_0656 +
25926192-25926289,25927530-25927659,25928248-25928294,
25929274-25929388,25929504-25929753,25930079-25930239,
25930372-25930567,25930672-25930836,25930918-25931070,
25931160-25931248,25931385-25931423,25931460-25931681,
25933503-25934165
Length = 775
Score = 29.1 bits (62), Expect = 1.5
Identities = 23/71 (32%), Positives = 30/71 (42%)
Frame = -1
Query: 402 NALLAAHPPRRLCVGRNRNRSPQEA*DTGPCTGLIGAIPLQLGGNSRAV*TRVWGSTPAP 223
+A+ PPRRL GR+ R+P P L A P S+A +R W P P
Sbjct: 552 SAIQVGWPPRRLPHGRHGRRNPSRR--RRPTPPLTPASPPLERVASKAGGSRGWLRRPPP 609
Query: 222 RPLTSDTSVAG 190
+ T AG
Sbjct: 610 EQARASTVEAG 620
>03_04_0113 + 17382370-17382714
Length = 114
Score = 28.3 bits (60), Expect = 2.7
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = -3
Query: 382 PPASPVRRTKPQPFSSRSLRYWSMYWFNRGHSVA-ARRQQSRSVNAG-VGFDSGAQAAD 212
PP P+ P PFS + W + RG + A ARR++ R V G G ++ A AD
Sbjct: 51 PPPLPLPSPPPLPFSDLARGEW--WRLRRGSATAVARRRRWRPVGLGSSGVEAEAVEAD 107
>02_03_0212 -
16460665-16460766,16460971-16461298,16461379-16461502,
16461576-16461825,16462185-16462265,16463030-16463114,
16463200-16463321,16463865-16464672,16464775-16465027,
16465998-16466796
Length = 983
Score = 28.3 bits (60), Expect = 2.7
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -3
Query: 397 TTSCPPPASPVRRTKPQP 344
+TS PPP SP+ T P+P
Sbjct: 33 STSTPPPPSPIPSTSPRP 50
>10_08_0142 - 15169825-15170538
Length = 237
Score = 27.9 bits (59), Expect = 3.6
Identities = 28/88 (31%), Positives = 38/88 (43%), Gaps = 5/88 (5%)
Frame = -1
Query: 393 LAAHPPRRLCVGRNRNRSPQEA*DTGPCTGLIGAIPLQL---GGNSRAV*TRVWGSTPAP 223
L A PPRR G +RSP EA G G + I +L G + A +T P
Sbjct: 141 LTASPPRRAHDGSGMSRSP-EAEKGGAVGGYLRRISKRLMTTRGATAAADAAAPSATMIP 199
Query: 222 R--PLTSDTSVAGGAALTHPHFHQSFAI 145
R PL + GG+A+ ++F I
Sbjct: 200 RSSPLVGEGRRKGGSAIATEDEIRAFVI 227
>07_03_1775 +
29431106-29431193,29431290-29431329,29431620-29432080,
29432173-29432363,29432503-29432635,29432839-29433428
Length = 500
Score = 27.9 bits (59), Expect = 3.6
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -1
Query: 276 GGNSRAV*TRVWGSTPAPRPLTSDTSVAGGAALTHP 169
GG+ RA T P+P P T+ A AA+T P
Sbjct: 85 GGHHRAAHTPAPSPAPSPSPFTAPPKSASPAAITIP 120
>07_03_1021 - 23347426-23347619,23348040-23348145,23348257-23348268
Length = 103
Score = 27.9 bits (59), Expect = 3.6
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = -1
Query: 357 RNRNRSPQEA*DTGPCTGLIGAIPLQLGGNSRAV*TRVWGSTPAPRPLT 211
+ +NR + A +T P L+ P +L G+ A G T PRP T
Sbjct: 39 QGKNRIGESAGETAPTRALLRFGPKRLSGHRSAAACGPSGHTARPRPST 87
>01_06_1038 -
33997124-33997177,33997256-33997318,33997456-33997506,
33998100-33998257,33998406-33998491,33998674-33999527
Length = 421
Score = 27.9 bits (59), Expect = 3.6
Identities = 20/64 (31%), Positives = 31/64 (48%)
Frame = -3
Query: 403 QRTTSCPPPASPVRRTKPQPFSSRSLRYWSMYWFNRGHSVAARRQQSRSVNAGVGFDSGA 224
+R+ S PPPAS K P S ++ + G++VAA R Q +VN + + +
Sbjct: 159 RRSASAPPPASSEGSAKISP--SSPVKAAAAAADTNGNAVAADRPQEVAVNIEITEMAAS 216
Query: 223 QAAD 212
A D
Sbjct: 217 TARD 220
>01_05_0386 - 21683909-21685334,21685513-21685541
Length = 484
Score = 27.9 bits (59), Expect = 3.6
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 8/33 (24%)
Frame = -2
Query: 281 SSAATVAQCER--------GCGVRLRRPGR*RQ 207
++ AT +QCER GCG + RRPGR R+
Sbjct: 216 TATATTSQCERVRGGGGGGGCGRKQRRPGRKRK 248
>12_01_1052 +
10821964-10822064,10822434-10822607,10823086-10823346,
10829833-10831798,10832114-10832515
Length = 967
Score = 27.5 bits (58), Expect = 4.7
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -1
Query: 249 RVWGSTPAPRPLTSDTSVAGGAALTHP 169
R+W + P PL+ + GGA THP
Sbjct: 3 RLWAAPPLSSPLSYPVARGGGAWPTHP 29
>03_06_0140 +
31951569-31951710,31951943-31952037,31952141-31953982,
31954065-31954179,31954260-31954897
Length = 943
Score = 27.5 bits (58), Expect = 4.7
Identities = 17/45 (37%), Positives = 20/45 (44%)
Frame = +3
Query: 114 DFRDEIMIKAISRRIDENAGELMRHLLQQMYLTSAAWAPESNPTP 248
D +D+ M EN LMR LL+ YL A A NP P
Sbjct: 744 DLQDQKMHVVSCDSFTENQLLLMRMLLKDQYLLETAKALVRNPVP 788
>07_03_0279 +
16211180-16211410,16211516-16211659,16212466-16212597,
16213478-16213591
Length = 206
Score = 27.1 bits (57), Expect = 6.2
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = -3
Query: 385 PPPASPVRRTKPQPFSSRSLRYWSMYWF 302
PPP P R KP P SR W+ +F
Sbjct: 2 PPPVPPEERRKPSPAESRQ---WTQRFF 26
>03_06_0238 -
32570222-32570330,32570538-32570599,32570658-32570883,
32571165-32571532,32571644-32571743,32571817-32571879,
32573077-32573123,32573222-32573353
Length = 368
Score = 27.1 bits (57), Expect = 6.2
Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -3
Query: 337 SRSLRYWSMYWFNRGHSVAA-RRQQSRSVNAGV 242
++S R W WF+R ++++ + R VNAG+
Sbjct: 243 TKSTRGWKERWFSRSNTISGLGTEVRREVNAGI 275
>12_02_0986 + 25055674-25056571,25057741-25057782,25058651-25059888
Length = 725
Score = 26.6 bits (56), Expect = 8.2
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -3
Query: 241 GFDSGAQAADVRYICCRRCR 182
G +G AA V ++CC RCR
Sbjct: 314 GVLAGTVAAGVLFLCCARCR 333
>09_03_0125 -
12531409-12531442,12531577-12531668,12531747-12532337,
12532454-12532789,12532899-12533156,12533867-12533971,
12534625-12534702,12535464-12535542,12535649-12535723,
12535828-12535946,12536042-12537106
Length = 943
Score = 26.6 bits (56), Expect = 8.2
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -3
Query: 253 NAGVGFDSGAQAADVRYICCRRCRINSP 170
NAG G +S A++ CRRCR+ P
Sbjct: 201 NAGGGDNSVGFIAEMMCCACRRCRVLPP 228
>04_04_0341 + 24521034-24521498
Length = 154
Score = 26.6 bits (56), Expect = 8.2
Identities = 14/26 (53%), Positives = 15/26 (57%)
Frame = -2
Query: 296 GPFRCSSAATVAQCERGCGVRLRRPG 219
G RC +AAT A GVRLRR G
Sbjct: 24 GISRCYTAATTAATMASGGVRLRRRG 49
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,950,967
Number of Sequences: 37544
Number of extensions: 292825
Number of successful extensions: 1314
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1254
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1310
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 778540620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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