Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_F16
(423 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_35563| Best HMM Match : Keratin_B2 (HMM E-Value=3.3) 30 0.91
SB_23397| Best HMM Match : DSL (HMM E-Value=0.00011) 28 2.8
SB_56408| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.7
SB_41459| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.7
SB_25803| Best HMM Match : PLDc (HMM E-Value=3.9e-12) 28 3.7
SB_7583| Best HMM Match : PT (HMM E-Value=6.1) 28 3.7
SB_5580| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.7
SB_2250| Best HMM Match : MgtE_N (HMM E-Value=8.4) 28 3.7
SB_58248| Best HMM Match : Pox_A32 (HMM E-Value=0.97) 27 4.8
SB_43834| Best HMM Match : Pox_A32 (HMM E-Value=0.0085) 27 4.8
SB_12765| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.8
SB_55055| Best HMM Match : rve (HMM E-Value=4.8e-05) 27 6.4
SB_9603| Best HMM Match : Extensin_2 (HMM E-Value=0.0058) 27 6.4
SB_1528| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
SB_48789| Best HMM Match : M (HMM E-Value=1.3e-10) 27 8.5
SB_18710| Best HMM Match : Glycophorin_A (HMM E-Value=0.42) 27 8.5
>SB_35563| Best HMM Match : Keratin_B2 (HMM E-Value=3.3)
Length = 138
Score = 29.9 bits (64), Expect = 0.91
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = -3
Query: 418 SAACLQRTTSC-PPPASPVRRTKPQPFSSRS 329
+A C R C PPP++P+ T P P++ RS
Sbjct: 72 TAGCDVRQDECEPPPSAPLDATHPLPYTIRS 102
>SB_23397| Best HMM Match : DSL (HMM E-Value=0.00011)
Length = 331
Score = 28.3 bits (60), Expect = 2.8
Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Frame = -3
Query: 370 PVRRTKPQPFSSRSLRYWSMYWFNRGHSVAARRQQS-RSVNAGVGFDSGAQAADVRYICC 194
P +R + ++L +W RG+ +AAR++ R++ G D + + +C
Sbjct: 41 PAKRRQRLSHLKKTLSFWGSARVVRGNPIAARKKTDVRTITGNNGPD--PNSFRLHCVCN 98
Query: 193 RRCRINSPAFSSILRD 146
R+ S F S L +
Sbjct: 99 NNVRVFSACFMSALEE 114
>SB_56408| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 350
Score = 27.9 bits (59), Expect = 3.7
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Frame = +3
Query: 261 RDCCRRAATEWPLLNQYMDQYLKLLEENGCGFVRRTGDA---GGGQLVVRCK 407
R CCRRAA + N+ + + +G RR+G + GG Q V C+
Sbjct: 26 RQCCRRAANVGGISNRGIGGFSSQPSPSGRRLPRRSGSSWSRGGQQSVQGCR 77
>SB_41459| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1675
Score = 27.9 bits (59), Expect = 3.7
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -3
Query: 418 SAACLQRTTSCPP-PASPVRRTKPQPFSSRS 329
+A C R C P P++P+ T P PF+ RS
Sbjct: 14 TAGCDVRQDECEPSPSAPLDATHPLPFTIRS 44
>SB_25803| Best HMM Match : PLDc (HMM E-Value=3.9e-12)
Length = 854
Score = 27.9 bits (59), Expect = 3.7
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +3
Query: 159 DENAGELMRHLLQQMYLTSAAWAPESNPTPAF 254
D AGE MR L+ M T A W ++NP ++
Sbjct: 24 DRKAGEFMRSLVHVMATTGAEWL-QTNPHDSY 54
>SB_7583| Best HMM Match : PT (HMM E-Value=6.1)
Length = 501
Score = 27.9 bits (59), Expect = 3.7
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -3
Query: 418 SAACLQRTTSCPP-PASPVRRTKPQPFSSRS 329
+A C R C P P++P+ T P PF+ RS
Sbjct: 367 TAGCDVRQDECEPSPSAPLDATHPLPFTIRS 397
>SB_5580| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 187
Score = 27.9 bits (59), Expect = 3.7
Identities = 20/93 (21%), Positives = 37/93 (39%), Gaps = 1/93 (1%)
Frame = +3
Query: 60 AEANDTIYWRVNYDRFHQDFRDEIMIKAISRRIDENAGELMRHLLQQMYLT-SAAWAPES 236
++ N I W+ N DF D+I + + + + + + Q++ LT S P +
Sbjct: 6 SQGNTEIRWKFNAQLEDLDFADDIALISTNHSQMQKKTDKLSETAQKVGLTKSKLQGPRA 65
Query: 237 NPTPAFTLRDCCRRAATEWPLLNQYMDQYLKLL 335
N P + + W LL + + LL
Sbjct: 66 NQAPKWPSHQRNQGLYLSWSLLPMSKENFGHLL 98
>SB_2250| Best HMM Match : MgtE_N (HMM E-Value=8.4)
Length = 232
Score = 27.9 bits (59), Expect = 3.7
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Frame = +3
Query: 261 RDCCRRAATEWPLLNQYMDQYLKLLEENGCGFVRRTGDA---GGGQLVVRCK 407
R CCRRAA + N+ + + +G RR+G + GG Q V C+
Sbjct: 26 RQCCRRAANVGGISNRGIGGFSSQPSPSGRRLPRRSGSSWSRGGQQSVQGCR 77
>SB_58248| Best HMM Match : Pox_A32 (HMM E-Value=0.97)
Length = 540
Score = 27.5 bits (58), Expect = 4.8
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -3
Query: 418 SAACLQRTTSCPP-PASPVRRTKPQPFSSRS 329
+A C R C P P++P+ T P PF+ RS
Sbjct: 480 TAGCDVRQDECEPSPSAPLDDTHPLPFTIRS 510
>SB_43834| Best HMM Match : Pox_A32 (HMM E-Value=0.0085)
Length = 1227
Score = 27.5 bits (58), Expect = 4.8
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = -3
Query: 418 SAACLQRTTSCPP-PASPVRRTKPQPFSSRS 329
+A C R C P P +P+ T P PF+ RS
Sbjct: 1044 TAGCDVRQDECEPSPGAPLDATHPLPFTIRS 1074
>SB_12765| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 100
Score = 27.5 bits (58), Expect = 4.8
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = -3
Query: 415 AACLQRTTSCPP-PASPVRRTKPQPFSSRS 329
A C R C P P++P+ T P PF+ RS
Sbjct: 20 AGCDVRQDECEPSPSAPLDATHPLPFTIRS 49
>SB_55055| Best HMM Match : rve (HMM E-Value=4.8e-05)
Length = 228
Score = 27.1 bits (57), Expect = 6.4
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -1
Query: 225 PRPLTSDTSVAGGAALTHPHFHQ 157
PRPLT + + G A++ PH HQ
Sbjct: 184 PRPLTPNHLLLGRASVNIPHTHQ 206
>SB_9603| Best HMM Match : Extensin_2 (HMM E-Value=0.0058)
Length = 339
Score = 27.1 bits (57), Expect = 6.4
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = -3
Query: 397 TTSCPPPASPVRRTKPQP 344
T SCPPP +PV QP
Sbjct: 155 TQSCPPPLNPVMSATSQP 172
>SB_1528| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2409
Score = 26.6 bits (56), Expect = 8.5
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = -1
Query: 363 VGRNRNRSPQEA*DTGPCTGLIGAIPLQLGGNSRAV*TRVWGSTPAP 223
+GR+ NR+P E+ DT + ++ GN+ T + + P P
Sbjct: 1621 IGRDPNRTPSESSDTSKTKPKLKIQSFEMAGNTPNPTTTTFHTDPPP 1667
>SB_48789| Best HMM Match : M (HMM E-Value=1.3e-10)
Length = 2478
Score = 26.6 bits (56), Expect = 8.5
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +3
Query: 264 DCCRRAATEWPLLNQYMDQYLKLLEE 341
D +R E LN YMDQ LK +EE
Sbjct: 360 DALQREKLENTRLNNYMDQILKEIEE 385
>SB_18710| Best HMM Match : Glycophorin_A (HMM E-Value=0.42)
Length = 1451
Score = 26.6 bits (56), Expect = 8.5
Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 2/75 (2%)
Frame = -3
Query: 412 ACLQRTTSCPPPASPVRRTKPQPFSSRSLRYWSMYWFNRGHSVAARRQQSRSVNAGVGFD 233
A LQ TS PP + + +S+ + + GH + R R+V G
Sbjct: 647 ATLQTNTSSPPVTTTATTPRTTSYSTEMPAFITSDTTLNGHVITPRADSERNVGTIAGGA 706
Query: 232 SGAQA--ADVRYICC 194
+G A A V I C
Sbjct: 707 TGGVALIAMVTMIVC 721
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,002,184
Number of Sequences: 59808
Number of extensions: 296599
Number of successful extensions: 881
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 880
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 801830705
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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