Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_F16
(423 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g36380.1 68415.m04464 ABC transporter family protein related ... 30 0.56
At4g32640.1 68417.m04646 sec23/sec24 transport protein-related 29 1.7
At5g59950.3 68418.m07518 RNA and export factor-binding protein, ... 28 3.0
At4g04980.1 68417.m00724 hydroxyproline-rich glycoprotein family... 28 3.0
At1g74650.1 68414.m08645 myb family transcription factor (cY13) ... 28 3.0
At4g22460.1 68417.m03244 protease inhibitor/seed storage/lipid t... 27 5.2
At3g50590.1 68416.m05533 transducin family protein / WD-40 repea... 27 5.2
At3g50110.1 68416.m05478 phosphatase-related similar to PTEN1 GI... 27 5.2
At1g23340.2 68414.m02919 expressed protein similar to At1g70550... 27 5.2
At1g23340.1 68414.m02918 expressed protein similar to At1g70550... 27 5.2
At4g08113.1 68417.m01331 myosin heavy chain-related similar to M... 27 6.9
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p... 27 6.9
At1g35150.1 68414.m04359 hypothetical protein 27 6.9
At2g36480.1 68415.m04477 zinc finger (C2H2-type) family protein ... 26 9.1
At2g28240.1 68415.m03428 hydroxyproline-rich glycoprotein family... 26 9.1
At2g20440.1 68415.m02386 RabGAP/TBC domain-containing protein si... 26 9.1
At1g02080.1 68414.m00130 transcriptional regulator-related conta... 26 9.1
>At2g36380.1 68415.m04464 ABC transporter family protein related to
multi drug resistance proteins and P-glycoproteins
Length = 1453
Score = 30.3 bits (65), Expect = 0.56
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Frame = -3
Query: 406 LQRTTSCPPPASP--VRRTK-PQPFSSRSLR-YWSMYWFN 299
L + S PPP S RTK QPFS+++ +W MYW N
Sbjct: 1151 LIKELSTPPPGSNDLYFRTKYAQPFSTQTKACFWKMYWSN 1190
>At4g32640.1 68417.m04646 sec23/sec24 transport protein-related
Length = 1069
Score = 28.7 bits (61), Expect = 1.7
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -3
Query: 382 PPASPVRRTKPQPFSSRSL 326
PP++P RT PQP S SL
Sbjct: 226 PPSAPYARTPPQPLGSHSL 244
>At5g59950.3 68418.m07518 RNA and export factor-binding protein,
putative
Length = 242
Score = 27.9 bits (59), Expect = 3.0
Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Frame = -3
Query: 400 RTTSCPPPASPVRRTKPQPFSSRSLRYWSMYWFNRGHSV-AARRQQSRSVNAGVGFDSGA 224
R T P RR P S+RS Y S GH + + R + RS + G ++G
Sbjct: 27 RGTGSGSGPGPTRRNNPNRKSTRSAPYQSAPESTWGHDMFSDRSEDHRSGRSSAGIETGT 86
Query: 223 Q 221
+
Sbjct: 87 K 87
>At4g04980.1 68417.m00724 hydroxyproline-rich glycoprotein family
protein Common family members: At4g18570, At3g25690,
At5g61090 [Arabidopsis thaliana]
Length = 681
Score = 27.9 bits (59), Expect = 3.0
Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +2
Query: 272 PPSCNGMAPIKPVHGPVSQAS-*GERLRFRPTHRRRGGWAAS 394
PPS AP P P+S+AS GE +F TH G A S
Sbjct: 329 PPSPEHKAPAPPPPPPMSKASESGEFCQFSKTHSTNGDNAPS 370
>At1g74650.1 68414.m08645 myb family transcription factor (cY13)
similar to myb protein cY13 GI:928930 from [Arabidopsis
thaliana]; contains Pfam profile: PF00249 myb
DNA-binding domain; identical to cDNA cY13 gene
GI:928929
Length = 330
Score = 27.9 bits (59), Expect = 3.0
Identities = 16/50 (32%), Positives = 22/50 (44%)
Frame = +1
Query: 238 TPHPRSHCATVAAELQRNGPY*TSTWTSISSFLRRTVAVSSDAQATRGVG 387
+P P H T A N WTS SS T +VS++ ++ G G
Sbjct: 193 SPKPHHHSTTTYASSTDNISKLLQNWTSSSSSKPNTSSVSNNRSSSPGEG 242
>At4g22460.1 68417.m03244 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein contains Pfam
profile: PF00234 protease inhibitor/seed storage/LTP
family
Length = 133
Score = 27.1 bits (57), Expect = 5.2
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -3
Query: 400 RTTSCPPPASPVRRTKPQP 344
R+T+CPPP + KP P
Sbjct: 25 RSTNCPPPPGKHNKQKPSP 43
>At3g50590.1 68416.m05533 transducin family protein / WD-40 repeat
family protein contains 3 WD-40 repeats (PF00400); some
similarity to s-tomosyn isoform (GI:4689231)[Rattus
norvegicus]; contains non-consensus AT-AC splice sites
at intron 18
Length = 1606
Score = 27.1 bits (57), Expect = 5.2
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -2
Query: 173 TRIFINPSRYSLDHNFISEVLMKSV 99
TR+ INP+R S NF M+S+
Sbjct: 275 TRVIINPNRPSTQTNFFEPAAMESI 299
>At3g50110.1 68416.m05478 phosphatase-related similar to PTEN1
GI:5566292 from [Drosophila melanogaster]; contains
prosite evidence: PS00383: Tyrosine specific protein
phosphatases active site
Length = 632
Score = 27.1 bits (57), Expect = 5.2
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -3
Query: 388 CPPPASPVRRTKPQPFSSRSLRYWS 314
CPP +SP R + P FSS L W+
Sbjct: 82 CPPGSSP-RESPPSIFSSSGLSSWA 105
>At1g23340.2 68414.m02919 expressed protein similar to At1g70550,
At1g10750 contains Pfam profile PF03080: Arabidopsis
proteins of unknown function
Length = 409
Score = 27.1 bits (57), Expect = 5.2
Identities = 20/57 (35%), Positives = 24/57 (42%)
Frame = -3
Query: 391 SCPPPASPVRRTKPQPFSSRSLRYWSMYWFNRGHSVAARRQQSRSVNAGVGFDSGAQ 221
SCP P+RRT Q LR S+ F R R S VG+ SG+Q
Sbjct: 120 SCPEGTIPIRRTTEQDM----LRANSVRRFGRKIRRVRRDSSSNGHEHAVGYVSGSQ 172
>At1g23340.1 68414.m02918 expressed protein similar to At1g70550,
At1g10750 contains Pfam profile PF03080: Arabidopsis
proteins of unknown function
Length = 409
Score = 27.1 bits (57), Expect = 5.2
Identities = 20/57 (35%), Positives = 24/57 (42%)
Frame = -3
Query: 391 SCPPPASPVRRTKPQPFSSRSLRYWSMYWFNRGHSVAARRQQSRSVNAGVGFDSGAQ 221
SCP P+RRT Q LR S+ F R R S VG+ SG+Q
Sbjct: 120 SCPEGTIPIRRTTEQDM----LRANSVRRFGRKIRRVRRDSSSNGHEHAVGYVSGSQ 172
>At4g08113.1 68417.m01331 myosin heavy chain-related similar to
Myosin heavy chain, skeletal muscle, extraocular
(MyHC-eo) (SP:Q9UKX3) {Homo sapiens}
Length = 764
Score = 26.6 bits (56), Expect = 6.9
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = +3
Query: 36 QVMNTGNLAEANDTIYWRVNYDRFHQDFRDEIMIKAISRRI 158
Q N+G + + +W N+DR H DE + + R I
Sbjct: 450 QTSNSGGGSAGSRPFHWSYNHDRDHPIVEDEAGLANLLRHI 490
>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
protein contains Pfam profile PF01480: PWI domain
Length = 878
Score = 26.6 bits (56), Expect = 6.9
Identities = 19/49 (38%), Positives = 23/49 (46%)
Frame = -3
Query: 403 QRTTSCPPPASPVRRTKPQPFSSRSLRYWSMYWFNRGHSVAARRQQSRS 257
+R S PPA RR P P + R +Y NR S RR +SRS
Sbjct: 367 RRRRSPSPPAR--RRRSPSPPARRRRSPSPLYRRNRSPSPLYRRNRSRS 413
>At1g35150.1 68414.m04359 hypothetical protein
Length = 459
Score = 26.6 bits (56), Expect = 6.9
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = +3
Query: 27 VLLQVMNTGNLAEANDTIYWRVNYDRFHQDFRDEIMIKAISRRIDENAGEL 179
V+ + +G E I VN+D + FRD ++ K ++ R D+ G L
Sbjct: 47 VVHEEKKSGQKEELPSNISDPVNWDDMNMRFRDLLVEKGLATRHDKKGGYL 97
>At2g36480.1 68415.m04477 zinc finger (C2H2-type) family protein
weak similarity to S-locus protein 4 (GI:6069478)
[Brassica rapa]; weak similarity to Pre-mRNA cleavage
complex II protein Pcf11 (Fragment) (Swiss-Prot:O94913)
[Homo sapiens]; contains Prosite PS00028: Zinc finger,
C2H2 type, domain
Length = 828
Score = 26.2 bits (55), Expect = 9.1
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +2
Query: 230 GVEPHTRVHTARLLPPSCNGMAPIKPVHGPVSQ 328
G++P RV ++ +LP S +G P+H S+
Sbjct: 363 GIQPQPRVASSGILPSSGSGSDRQSPLHDSTSK 395
>At2g28240.1 68415.m03428 hydroxyproline-rich glycoprotein family
protein
Length = 660
Score = 26.2 bits (55), Expect = 9.1
Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Frame = +2
Query: 179 NAAPPATDVSDVSGLGAGVEPHTRVHTARLLPPSCNGMAP--IKPVHGPVSQ 328
+AAPP V+ + + P V A PP+ + P P P+SQ
Sbjct: 328 SAAPPRPSVTAAEPMNSTAPPRPSVTAAEATPPNLSAPLPHCNTPQPSPISQ 379
>At2g20440.1 68415.m02386 RabGAP/TBC domain-containing protein
similar to SP|P09379 GTPase-activating protein GYP7
(Fragment) {Yarrowia lipolytica}; contains Pfam profile
PF00566: TBC domain
Length = 425
Score = 26.2 bits (55), Expect = 9.1
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Frame = +3
Query: 192 LQQMYLTSAAWAPESNPTPAFTLRDCCRR--AATEWPLLNQY 311
L +YL WA E NPT T + R AA++ LL +Y
Sbjct: 302 LDALYLWELMWAMEYNPTMFATYEELENRNNAASDPKLLKRY 343
>At1g02080.1 68414.m00130 transcriptional regulator-related contains
Pfam PF04054: CCR4-Not complex component, Not1; contains
TIGRFAM TIGR01612: reticulocyte binding protein; similar
to General negative regulator of transcription subunit 1
(SP:P25655) {Saccharomyces cerevisiae}; Location of ESTs
gb|T44328 and gb|AA395265
Length = 2378
Score = 26.2 bits (55), Expect = 9.1
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Frame = +3
Query: 126 EIMIKAISRRIDENAGELMRHLLQQMYLTSAAWAPES-NPTPAFTLRDCCRRAATEWPLL 302
EI+++ ISR DE A + + + +Y +++ S N +RD C+R E
Sbjct: 1648 EIILRCISR--DEAAFAVAQKAFKALYENASSNLHVSANLAILVAIRDVCKRVVKELTSW 1705
Query: 303 NQYMDQYLKLLEENGCGFVRR 365
Y ++ KL ++ G ++R
Sbjct: 1706 VIYSEEDRKLNKDITIGLIQR 1726
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,497,548
Number of Sequences: 28952
Number of extensions: 194055
Number of successful extensions: 704
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 655255392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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