Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_F14
(547 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos... 27 1.8
SPBC244.01c |sid4||SIN component scaffold protein Sid4 |Schizosa... 27 1.8
SPAC29B12.10c |||OPT oligopeptide transporter family|Schizosacch... 27 2.4
SPAC22E12.05c |rer1||Rer1 family protein|Schizosaccharomyces pom... 26 3.2
SPBC6B1.05c |||ubiquitin-like conjugating enzyme|Schizosaccharom... 25 5.5
SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4 |Schi... 25 5.5
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 25 7.3
SPAC1556.02c |sdh1||succinate dehydrogenase Sdh1|Schizosaccharom... 25 7.3
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch... 25 7.3
SPAC19G12.12 |dlp1||decaprenyl diphosphate synthase subunit 2 Dl... 25 7.3
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 25 9.6
SPBC18H10.15 |ppk23||serine/threonine protein kinase Ppk23|Schiz... 25 9.6
SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyce... 25 9.6
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei... 25 9.6
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo... 25 9.6
SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase |Schizo... 25 9.6
>SPCC1450.11c |cek1||serine/threonine protein kinase
Cek1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1338
Score = 27.1 bits (57), Expect = 1.8
Identities = 18/51 (35%), Positives = 28/51 (54%)
Frame = +3
Query: 342 KKLADGYDLISELDKMFSTKVQVTIPKFKIETQIDLMEVLPKLGINAIFDP 494
K+ A Y + +LD++ Q+ IPK +IE L ++ PKL + I DP
Sbjct: 1206 KRNAISYPGLFQLDRL-----QMIIPKDEIELAEILKKIFPKLTLVLIDDP 1251
>SPBC244.01c |sid4||SIN component scaffold protein Sid4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 27.1 bits (57), Expect = 1.8
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +3
Query: 330 NGVLKKLADGYDLISELDKMFSTKVQVTIPKF 425
N + KL+D +L+ E +K +ST TIP F
Sbjct: 512 NNLDAKLSDESELMIEKNKSYSTPASSTIPTF 543
>SPAC29B12.10c |||OPT oligopeptide transporter
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 851
Score = 26.6 bits (56), Expect = 2.4
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +3
Query: 90 VLVNALYFKGMWKSQFSPM 146
++V LY+KG+W S + PM
Sbjct: 420 IVVPILYYKGVWFSNYLPM 438
>SPAC22E12.05c |rer1||Rer1 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 184
Score = 26.2 bits (55), Expect = 3.2
Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Frame = -3
Query: 227 FVRIFFVHHWYLYC-SLCIYVEGL 159
F+RI V WY+ C +L IY+ L
Sbjct: 48 FIRILLVRGWYIVCYTLAIYLLNL 71
>SPBC6B1.05c |||ubiquitin-like conjugating
enzyme|Schizosaccharomyces pombe|chr 2|||Manual
Length = 649
Score = 25.4 bits (53), Expect = 5.5
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = -1
Query: 523 SESLSNQNYPGSKIALIPSLGKTSIRSI*VSILNFGMVTCTLVENILS 380
SES S N + L+P L I++ +L G + C + N+LS
Sbjct: 309 SESASTLNLSLMRWRLVPQLDLDRIQNSKCLLLGAGTLGCGVARNLLS 356
>SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 289
Score = 25.4 bits (53), Expect = 5.5
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = +1
Query: 232 ETAPNSRRRFWKWLTRVTKQAWSSCCH 312
E +R F +W R A +SCCH
Sbjct: 161 ELVRRGQREFDRWCVRRFSPASNSCCH 187
>SPAC29A4.11 |rga3||GTPase activating protein
Rga3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 969
Score = 25.0 bits (52), Expect = 7.3
Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Frame = -1
Query: 526 YSESLSNQNYPGSKIALIPSLGKTSIRSI*VSILNFGMVTCT-LVENILSNSDMRS*PSA 350
+ +S + N S +L P++ + ++ S + ++ T E I+ N MRS +A
Sbjct: 289 HKQSFTPVNDSSSSDSLKPTINEEALDDFAGSASPYKTMSLTDRAEPIVMNGHMRSLHNA 348
Query: 349 SFFNTPFRPSISCGNTTTMLAWSPS 275
+ PF PS +T + SP+
Sbjct: 349 TSPFRPFSPSYRSSDTHSPRTRSPN 373
>SPAC1556.02c |sdh1||succinate dehydrogenase
Sdh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 641
Score = 25.0 bits (52), Expect = 7.3
Identities = 9/14 (64%), Positives = 13/14 (92%)
Frame = -1
Query: 121 IPLKYRALTRTTLE 80
+ LKYRA+TRTT++
Sbjct: 614 VTLKYRAVTRTTMD 627
>SPCC663.03 |pmd1||leptomycin efflux transporter
Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1362
Score = 25.0 bits (52), Expect = 7.3
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +3
Query: 345 KLADGYDLISELDKMFSTKV 404
KLA+ YD I L + FST V
Sbjct: 542 KLANAYDFIMTLPEQFSTNV 561
>SPAC19G12.12 |dlp1||decaprenyl diphosphate synthase subunit 2 Dlp1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 294
Score = 25.0 bits (52), Expect = 7.3
Identities = 10/35 (28%), Positives = 19/35 (54%)
Frame = +3
Query: 288 ASMVVVLPHEIDGLNGVLKKLADGYDLISELDKMF 392
+ ++ +L E+D LNG + D L+ E+ K +
Sbjct: 46 SDLLKMLTEEMDSLNGQINTWTDNNPLLDEITKPY 80
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1428
Score = 24.6 bits (51), Expect = 9.6
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = +3
Query: 297 VVVLPHEIDGLNGVLKKLADGYDLISELDKMFSTKVQVTIPKFKIE 434
V+VL I + + G DL SEL K+ + QVT FK++
Sbjct: 651 VLVLESPIIKRSLIRNNRLKGRDLFSELVKITESSFQVTQDIFKLD 696
>SPBC18H10.15 |ppk23||serine/threonine protein kinase
Ppk23|Schizosaccharomyces pombe|chr 2|||Manual
Length = 398
Score = 24.6 bits (51), Expect = 9.6
Identities = 16/63 (25%), Positives = 29/63 (46%)
Frame = -3
Query: 368 EIVTISKFFQHSIQTIDFMWQHDDHACLVTLVSHFQNLRLEFGAVSVFVRIFFVHHWYLY 189
++ + +F +H ++T+ D L S + L L+ A + F+ HHWYL+
Sbjct: 147 DVYLVMEFMEHDLKTLLDNMPED------FLQSEVKTLMLQLLAATAFMH----HHWYLH 196
Query: 188 CSL 180
L
Sbjct: 197 RDL 199
>SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 610
Score = 24.6 bits (51), Expect = 9.6
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
Frame = +3
Query: 225 KYGDSPELQAQILEMAYEGDQASMVVVLPHEIDGLNGVLKKLADGYDLISELDKMFSTKV 404
+Y P+LQA M EG+QA+ D + V L + Y LD +T
Sbjct: 207 RYASHPDLQALNTWMTNEGNQAN---------DEMEDVSLYLEERYG--RNLDLSLATAA 255
Query: 405 QVTIPK---FKIETQIDLMEVLPKLG 473
++ + + ++ ++DL + LPK G
Sbjct: 256 KLVLRRRIAGTLKDEVDLQKALPKEG 281
>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 968
Score = 24.6 bits (51), Expect = 9.6
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +3
Query: 342 KKLA-DGYDLISELDKMFSTKVQVTIPKFKIETQIDLME 455
KKL+ D LI +LD + S + K K++ Q DL+E
Sbjct: 152 KKLSVDNAHLIKQLDLLSSNMKTLMKEKTKVQGQRDLLE 190
>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1065
Score = 24.6 bits (51), Expect = 9.6
Identities = 13/49 (26%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +3
Query: 327 LNGVLKKLADGYDLISELDKMFSTKVQVTIPKFKIET-QIDLMEVLPKL 470
+N VLK + + +KM +++ V K+K+E ++D +V +L
Sbjct: 731 MNSVLKVKENSIKATNNFEKMLGSRLNVIEAKYKLEKHEMDANQVNARL 779
>SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 944
Score = 24.6 bits (51), Expect = 9.6
Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
Frame = +3
Query: 165 FHIDTQTTVEV--PMMYKEDTYKYGDSPELQAQILEMAYEGDQASMVVVLPHEIDGLN 332
F DT EV M KE++ + L + E D S++ LP EID N
Sbjct: 17 FSFDTVPHDEVGSKFMQKEESKDWIADTPLDESAIVSEEESDDDSLLSDLPEEIDSTN 74
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,455,664
Number of Sequences: 5004
Number of extensions: 54437
Number of successful extensions: 167
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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