Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_F14
         (547 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38975| Best HMM Match : Serpin (HMM E-Value=0)                     112   2e-25
SB_55238| Best HMM Match : Serpin (HMM E-Value=0)                     107   6e-24
SB_55237| Best HMM Match : Serpin (HMM E-Value=0)                     105   2e-23
SB_58276| Best HMM Match : MIB_HERC2 (HMM E-Value=8.3e-33)             30   1.1  
SB_9375| Best HMM Match : Sec6 (HMM E-Value=0.35)                      28   4.3  
SB_46574| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  

>SB_38975| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 380

 Score =  112 bits (269), Expect = 2e-25
 Identities = 57/166 (34%), Positives = 88/166 (53%), Gaps = 2/166 (1%)
 Frame = +3

Query: 6   INKWVESKTNDRIKXXXXXXXXXXXXRVVLVNALYFKGMWKSQFSPMNTMDQPFHIDTQT 185
           +N+WVE KT D+IK             + LVNA+YFKG W   F+   T    F      
Sbjct: 133 VNRWVEQKTKDKIKNLIPEGMFNKDTILCLVNAVYFKGSWMKHFNRNATQSGKFKTTPSQ 192

Query: 186 TVEVPMMYKEDTYKYGDSPELQAQILEMAYEGDQASMVVVLPHEIDGLNGVLKKLADG-- 359
            ++V  MY+   ++Y +S  L  QI+E+ Y G++ SMVV+LP+E+DGL  +   L     
Sbjct: 193 EIQVQFMYQSSEFRYLESSTLGCQIVELPYAGEKLSMVVLLPNEVDGLGKLESSLNKETL 252

Query: 360 YDLISELDKMFSTKVQVTIPKFKIETQIDLMEVLPKLGINAIFDPG 497
            + ++ L      +V+VT+PKF +  +  L E L  +G + +F PG
Sbjct: 253 QEAMTSLRNSHPEEVEVTLPKFTLTQEFSLGETLKGMGASDLFSPG 298


>SB_55238| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 345

 Score =  107 bits (257), Expect = 6e-24
 Identities = 56/164 (34%), Positives = 87/164 (53%), Gaps = 2/164 (1%)
 Frame = +3

Query: 6   INKWVESKTNDRIKXXXXXXXXXXXXRVVLVNALYFKGMWKSQFSPMNTMDQPFHIDTQT 185
           +N+WVE +T  +I             R+ LVNA+YFKGMW   F   ++    F   +  
Sbjct: 96  VNQWVEERTKKKICDLIAPGVFNMLTRLTLVNAIYFKGMWDKPFKKEHSHSSEFRTTSSN 155

Query: 186 TVEVPMMYKEDTYKYGDSPELQAQILEMAYEGDQASMVVVLPHEIDGLNGVLKKLADG-- 359
            VEV MM+++  +KY  S + + ++LE+ Y   Q SMV+VLP E +GL    + L     
Sbjct: 156 EVEVEMMFQKSKFKYLHSDKYKCKLLELPYVDTQLSMVLVLPDETEGLARFEQDLTHDKM 215

Query: 360 YDLISELDKMFSTKVQVTIPKFKIETQIDLMEVLPKLGINAIFD 491
            D+ + +       V+V IPKFK+ ++  L E L +LG+  +FD
Sbjct: 216 TDIFNSVSSQRPADVEVYIPKFKMTSEFKLNEALQELGMKKMFD 259


>SB_55237| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 363

 Score =  105 bits (252), Expect = 2e-23
 Identities = 52/164 (31%), Positives = 91/164 (55%), Gaps = 2/164 (1%)
 Frame = +3

Query: 6   INKWVESKTNDRIKXXXXXXXXXXXXRVVLVNALYFKGMWKSQFSPMNTMDQPFHI--DT 179
           +N WV  +T   IK            R+++VNA+YFKG+WK +F   NT    F +    
Sbjct: 101 VNAWVHQQTKGNIKELIPHGVINSLTRLIIVNAVYFKGVWKKEFGEENTFHAAFFVPESH 160

Query: 180 QTTVEVPMMYKEDTYKYGDSPELQAQILEMAYEGDQASMVVVLPHEIDGLNGVLKKLADG 359
           ++ +EV MM ++    +    +++ +++E+ Y GD  +MV++LP E  G+   L+K  D 
Sbjct: 161 ESKIEVEMMTRKMKVNFYYDADIKCRVVELPYSGDDTAMVIILPEEPSGIFS-LEKSIDV 219

Query: 360 YDLISELDKMFSTKVQVTIPKFKIETQIDLMEVLPKLGINAIFD 491
             +      M +T V+V+IPKF++  +++L  +L  LG++ IFD
Sbjct: 220 EIMEKWRRLMINTTVEVSIPKFRLSQKLELRSLLQDLGVSDIFD 263


>SB_58276| Best HMM Match : MIB_HERC2 (HMM E-Value=8.3e-33)
          Length = 2822

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 37/141 (26%), Positives = 55/141 (39%), Gaps = 17/141 (12%)
 Frame = +3

Query: 123  WKSQFSP-MNTMDQPFHIDTQTTVEVPMMY-------KEDT-------YKYGDSPELQAQ 257
            W+S      N +D+P   D Q T+     Y       KED         K G   ++ A 
Sbjct: 2448 WRSSIDDNTNELDRPSLEDNQNTINKIDSYSKEQEIIKEDLKDDDEAELKTGSCEDVSAL 2507

Query: 258  ILEMAYEGD--QASMVVVLPHEIDGLNGVLKKLADGYDLISELDKMFSTKVQVTIPKFKI 431
            +LE  +        M  V PH    L+  LK +    D I   D + + + +V + K K 
Sbjct: 2508 VLEPCWFAGLLDEDMADVDPHRASFLDQ-LKDMVARRDAILNDDSLSTDEKKVKVQKLKF 2566

Query: 432  ETQIDLMEVLPKLGINAIFDP 494
            +T  ++   L  LGI   F P
Sbjct: 2567 KTSTEVECSLEDLGITFQFSP 2587


>SB_9375| Best HMM Match : Sec6 (HMM E-Value=0.35)
          Length = 1049

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = +3

Query: 384 KMFSTKVQVTIPKFKIETQIDLMEVLPKLGINAIF 488
           ++F+TK+Q  +P F+IET +   E++     N I+
Sbjct: 258 QVFNTKLQSKLPLFQIETALSAPEIVLSPPANEIY 292


>SB_46574| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 360

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = -3

Query: 245 FGAVSVFVRIFFV-HHWYLYCSLCIYVEGLIHC 150
           F  V V V IF V + +YLY   C Y+  L  C
Sbjct: 249 FKTVGVVVAIFLVCNSFYLYVMACFYLAKLCSC 281


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,129,734
Number of Sequences: 59808
Number of extensions: 397782
Number of successful extensions: 1232
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1228
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1252112599
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)