Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_F13
         (630 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1393.08 |||transcription factor, zf-GATA type |Schizosacchar...    30   0.32 
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S...    26   5.2  
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual           25   6.8  
SPCC330.05c |ura4||orotidine 5'-phosphate decarboxylase Ura4 |Sc...    25   9.0  
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|...    25   9.0  
SPBC18A7.02c |||seven transmembrane receptor-like protein|Schizo...    25   9.0  
SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase |Schizo...    25   9.0  
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces...    25   9.0  

>SPCC1393.08 |||transcription factor, zf-GATA type
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 29.9 bits (64), Expect = 0.32
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +3

Query: 378 PPNQIKPVPVNPTPSAHPVTTPGPGSVKQLVNFYDSQ 488
           PP      P  PTPS+  + TP PG++     F +SQ
Sbjct: 160 PPFSYVQTPCIPTPSSALIDTPFPGALDSEFGFDESQ 196


>SPCC1827.04 |||ankyrin repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 600

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -2

Query: 407 DWHRFNLIRRLSRL 366
           DWHRFN  R++++L
Sbjct: 75  DWHRFNTKRKITKL 88


>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1097

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 132 FLAIYSSECRKTYKPIDKNANIDF 203
           F   + + CR T   +D+NAN +F
Sbjct: 416 FFEYFQASCRHTLNLLDENANYNF 439


>SPCC330.05c |ura4||orotidine 5'-phosphate decarboxylase Ura4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 264

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -3

Query: 472 LTSCLTLPGPGVVTGCAE 419
           +T+C T+PG G++ G  E
Sbjct: 120 ITNCHTVPGEGIIQGLKE 137


>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
           Orc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 972

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -2

Query: 269 LCRNLSRARITTVLCATAFHINEINICIF 183
           L +NLS   +  ++CA  F   +I  C F
Sbjct: 844 LVKNLSLLELALLICAVRFEARDIPACNF 872


>SPBC18A7.02c |||seven transmembrane receptor-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 457

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 187 MQILISLIWKAVAQSTVVMRALLRFRH 267
           M++LISL+W          + LL F+H
Sbjct: 1   MKLLISLLWSIFFSIVYSEKTLLNFKH 27


>SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +2

Query: 326 TDTDETGCYSNYCK 367
           TDTD  G Y++YCK
Sbjct: 265 TDTDFVGHYNHYCK 278


>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +3

Query: 378 PPNQIKPVPVNPTPSAHPVTTP 443
           P     P PV P P+A  VTTP
Sbjct: 361 PQAAFPPPPVMPQPAAAAVTTP 382


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,264,402
Number of Sequences: 5004
Number of extensions: 43319
Number of successful extensions: 118
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)