Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_F13
(630 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0414 + 9972157-9972257,9972925-9973003,9973657-9973755,997... 38 0.007
02_05_0814 - 31970558-31971126,31971242-31971413 31 1.00
09_06_0081 + 20745627-20748144,20748211-20748308 29 3.0
07_03_1710 - 28903614-28903673,28904982-28905146,28905453-289056... 29 3.0
05_04_0383 - 20801036-20801309,20801413-20801538,20801706-208017... 29 3.0
01_06_0146 + 26969011-26969995,26970878-26970930 29 3.0
02_05_1351 - 35855543-35856751 29 4.0
02_05_0897 + 32603060-32603387,32604348-32604589,32604681-326048... 29 4.0
12_02_0773 - 23033900-23034595 28 7.0
11_03_0072 + 9605273-9606814,9616982-9617016,9617271-9617348,961... 28 7.0
07_03_0615 + 19983003-19983238,19983297-19983558,19983651-199839... 28 7.0
06_01_0397 + 2855273-2855347,2855515-2855606,2856317-2856347,285... 28 7.0
01_06_1266 - 35865046-35866395 28 7.0
03_05_0111 - 20919291-20919439,20920128-20920237,20920341-209204... 27 9.3
03_02_0719 + 10654842-10654977,10655039-10655124,10655226-106570... 27 9.3
01_06_0556 + 30207124-30207581,30207692-30207901,30208016-302081... 27 9.3
>02_02_0414 +
9972157-9972257,9972925-9973003,9973657-9973755,
9973848-9973913,9974225-9974376,9974503-9974584,
9974696-9974781,9974919-9975098,9975320-9975717,
9976192-9976790,9977141-9977239
Length = 646
Score = 37.9 bits (84), Expect = 0.007
Identities = 18/52 (34%), Positives = 24/52 (46%)
Frame = +3
Query: 378 PPNQIKPVPVNPTPSAHPVTTPGPGSVKQLVNFYDSQGKGSPIRPYTYSQAV 533
P +Q P PV P HPV S +V +YD Q G P P+ Q++
Sbjct: 381 PASQAYPAPVQPALPQHPVAYSNGVSSNAIVPYYDDQNGGLPPPPWEIQQSM 432
>02_05_0814 - 31970558-31971126,31971242-31971413
Length = 246
Score = 30.7 bits (66), Expect = 1.00
Identities = 17/47 (36%), Positives = 19/47 (40%)
Frame = +3
Query: 378 PPNQIKPVPVNPTPSAHPVTTPGPGSVKQLVNFYDSQGKGSPIRPYT 518
P + P P P PS TTP P S Y S +P PYT
Sbjct: 144 PSSPSSPTPTTPNPSTPTPTTPYP-STPMPTTPYPSTPMTTPTTPYT 189
>09_06_0081 + 20745627-20748144,20748211-20748308
Length = 871
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +3
Query: 378 PPNQIKPVPVNPTPSAHPVTTPGPG 452
PP PVP+ PTP+ T P PG
Sbjct: 354 PPAPATPVPMPPTPTRLVPTPPAPG 378
>07_03_1710 -
28903614-28903673,28904982-28905146,28905453-28905638,
28905784-28905927,28906281-28906460,28906559-28907215
Length = 463
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +3
Query: 378 PPNQIKPVPVNPTPSAHPVTTPGP 449
PP Q +P PV+P P A P P P
Sbjct: 84 PPQQQQPRPVSPPPVAEPYYWPKP 107
>05_04_0383 -
20801036-20801309,20801413-20801538,20801706-20801730,
20801808-20802259,20802330-20802394,20802487-20802711,
20804750-20804878,20805095-20805306,20806861-20806894
Length = 513
Score = 29.1 bits (62), Expect = 3.0
Identities = 9/36 (25%), Positives = 18/36 (50%)
Frame = -2
Query: 332 CLWRCYSRNWCRPRWNWNSGSLCRNLSRARITTVLC 225
C W+ + N C ++W+ +C+++ R R C
Sbjct: 461 CEWKKQAGNVCAASFDWSCSGICKSVDRMRAIHSAC 496
>01_06_0146 + 26969011-26969995,26970878-26970930
Length = 345
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +3
Query: 381 PNQIKPVPVNPTPSAHPVTTPGPGSVKQLVNFYDSQGKGSP 503
P +P P +P PS P + P PGS + ++ S+ G P
Sbjct: 107 PAPDQPAPPSPPPSLPP-SPPAPGSPESMLEREASEADGEP 146
>02_05_1351 - 35855543-35856751
Length = 402
Score = 28.7 bits (61), Expect = 4.0
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +3
Query: 378 PPNQIKPVPVNPTPSAHPVTTPGP 449
PP+ P+P P P HP ++ P
Sbjct: 176 PPSPSPPIPATPLPRVHPSSSSSP 199
>02_05_0897 +
32603060-32603387,32604348-32604589,32604681-32604824,
32604889-32605050,32605129-32605212,32605528-32605601,
32605850-32606039,32606120-32606275,32606368-32606465,
32606976-32607102,32607193-32607292,32607402-32607572,
32607790-32607838,32607912-32608003,32608705-32608774,
32608999-32609023,32609059-32609293,32609425-32609525,
32609614-32609865
Length = 899
Score = 28.7 bits (61), Expect = 4.0
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +3
Query: 399 VPVNPTPSAHPVTTPGPG-SVKQLVNFYDSQGK 494
+P P P H TPG G +V V+F D+ GK
Sbjct: 704 MPGTPVPQPHEAPTPGSGWAVTPGVSFGDASGK 736
>12_02_0773 - 23033900-23034595
Length = 231
Score = 27.9 bits (59), Expect = 7.0
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = +3
Query: 378 PPNQIKPV-PVNPTPSAHPVTTPGPG 452
PP ++ P P P P A P+ PGPG
Sbjct: 48 PPKKLTPAPPTTPPPKAKPI-LPGPG 72
>11_03_0072 +
9605273-9606814,9616982-9617016,9617271-9617348,
9617427-9617501,9617583-9617657,9617731-9617977,
9618070-9618313,9618852-9619309,9619388-9619675,
9619751-9619788,9619882-9620452
Length = 1216
Score = 27.9 bits (59), Expect = 7.0
Identities = 19/55 (34%), Positives = 26/55 (47%)
Frame = -2
Query: 413 RIDWHRFNLIRRLSRLYSNWSNNRFRRCLWRCYSRNWCRPRWNWNSGSLCRNLSR 249
++ W+ F +IRRL RL+ N N R R W R + GS RN+ R
Sbjct: 271 KVMWN-FPIIRRLRRLFRNKGNARMMR--WHAEERQQDGMLRHPADGSQWRNIDR 322
>07_03_0615 +
19983003-19983238,19983297-19983558,19983651-19983906,
19983982-19984044,19984131-19984570
Length = 418
Score = 27.9 bits (59), Expect = 7.0
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = +3
Query: 387 QIKPVPVNPTPSAH-PVTTPGP-GSVKQLVNFYDSQGKGSPIRPYTYSQ 527
Q PVP P P+AH P TP P G + + S + S + P ++Q
Sbjct: 228 QRPPVPTGPRPAAHVPRPTPPPHGGFRAPFSTPPSSARPSVVPPTGFAQ 276
>06_01_0397 +
2855273-2855347,2855515-2855606,2856317-2856347,
2856687-2856830,2856935-2857162,2857374-2857487,
2857749-2858249
Length = 394
Score = 27.9 bits (59), Expect = 7.0
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = +3
Query: 378 PPNQIKPVPVNPTPSAHPVTTPGPGSVKQLVNFYDSQGKGSP 503
PP+Q KPV ++P VT P K + ++ G P
Sbjct: 328 PPDQKKPVALSPPDHKKTVTPSPPDQKKPVARVQKAKAAGPP 369
>01_06_1266 - 35865046-35866395
Length = 449
Score = 27.9 bits (59), Expect = 7.0
Identities = 16/51 (31%), Positives = 23/51 (45%)
Frame = +3
Query: 375 QPPNQIKPVPVNPTPSAHPVTTPGPGSVKQLVNFYDSQGKGSPIRPYTYSQ 527
QPP P +NP P +P VK L +F D G G+ + + +Q
Sbjct: 93 QPP----PTDLNPNPEPNPGCVLSSPYVKPLFSFADLDGNGNYKKTFPVTQ 139
>03_05_0111 -
20919291-20919439,20920128-20920237,20920341-20920466,
20920545-20920632,20920933-20921053,20921159-20921231,
20921399-20921462,20921543-20921739,20921844-20921899,
20922050-20922146,20923731-20923870
Length = 406
Score = 27.5 bits (58), Expect = 9.3
Identities = 7/30 (23%), Positives = 16/30 (53%)
Frame = -2
Query: 332 CLWRCYSRNWCRPRWNWNSGSLCRNLSRAR 243
C W+ + N C ++W+ +C++ R +
Sbjct: 359 CEWKAQAGNVCAASFDWSCSGICKSADRMK 388
>03_02_0719 +
10654842-10654977,10655039-10655124,10655226-10657001,
10657782-10657926,10658017-10658735
Length = 953
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/50 (26%), Positives = 21/50 (42%)
Frame = +3
Query: 378 PPNQIKPVPVNPTPSAHPVTTPGPGSVKQLVNFYDSQGKGSPIRPYTYSQ 527
PP KP+P++ P+ PG S + ++ K RP S+
Sbjct: 194 PPRSAKPLPMSHHRLLSPIKNPGFSSARNAAQIMEAAAKILEPRPQVSSR 243
>01_06_0556 + 30207124-30207581,30207692-30207901,30208016-30208100,
30208517-30208676,30208768-30208844,30208985-30209032,
30209504-30209594,30209703-30210004,30210214-30210495,
30210695-30211011,30211113-30211273,30211556-30211665,
30211752-30211902,30212438-30212578,30212688-30212857,
30213485-30213817,30213981-30214271,30214356-30214439,
30214620-30214753,30214946-30215173,30215273-30215444,
30215621-30215875,30215963-30216232
Length = 1509
Score = 27.5 bits (58), Expect = 9.3
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -2
Query: 365 YSNWSNNRFRRCLWRCYSRNWCRPRWN 285
YS + N+F+ CLW+ + W P +N
Sbjct: 1227 YSQSTFNQFKLCLWKQWWTYWRSPDYN 1253
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,614,236
Number of Sequences: 37544
Number of extensions: 293599
Number of successful extensions: 1056
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 940
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1046
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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