Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_F13
         (630 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27634| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.58 
SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.77 
SB_11782| Best HMM Match : P53_tetramer (HMM E-Value=3.3e-11)          31   0.77 
SB_11956| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_33433| Best HMM Match : Fasciclin (HMM E-Value=1.1e-09)             28   7.2  
SB_32416| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0021)               27   9.5  
SB_24958| Best HMM Match : S-methyl_trans (HMM E-Value=1.6e-40)        27   9.5  

>SB_27634| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 711

 Score = 31.5 bits (68), Expect = 0.58
 Identities = 13/20 (65%), Positives = 14/20 (70%)
 Frame = +3

Query: 396 PVPVNPTPSAHPVTTPGPGS 455
           P PV  TPS+ P  TPGPGS
Sbjct: 79  PTPVPATPSSPPRPTPGPGS 98


>SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 158

 Score = 31.1 bits (67), Expect = 0.77
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +3

Query: 375 QPPNQIKPVPVNPTPSAHPVTTPGP 449
           +P     P P  PTP+AH  TTP P
Sbjct: 93  KPTPATTPTPTKPTPTAHTPTTPTP 117



 Score = 31.1 bits (67), Expect = 0.77
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +3

Query: 381 PNQIKPVPVNPTPSAHPVTTPGP 449
           P    P P  PTP+AH  TTP P
Sbjct: 125 PTPKTPTPTTPTPTAHTPTTPTP 147



 Score = 29.1 bits (62), Expect = 3.1
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 381 PNQIKPVPVNPTPSAHPVTTPGPGS 455
           P Q  P P  P+P+A   TTP P +
Sbjct: 49  PTQTTPTPTTPSPTAPTQTTPTPAT 73



 Score = 28.3 bits (60), Expect = 5.4
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +3

Query: 387 QIKPVPVNPTPSAHPVTTPGP 449
           Q  P P  PTP+ H  T P P
Sbjct: 21  QTTPTPTKPTPTTHTPTKPSP 41


>SB_11782| Best HMM Match : P53_tetramer (HMM E-Value=3.3e-11)
          Length = 484

 Score = 31.1 bits (67), Expect = 0.77
 Identities = 17/53 (32%), Positives = 23/53 (43%)
 Frame = +3

Query: 381 PNQIKPVPVNPTPSAHPVTTPGPGSVKQLVNFYDSQGKGSPIRPYTYSQAVKQ 539
           P+ I P P  PT +  P  T  PG     V F    G      P+TYS  +++
Sbjct: 174 PSAITPPPDYPTTNLVPANTDFPGEYGFDVGFDKENGPTPKSAPWTYSHQLQK 226


>SB_11956| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 832

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/32 (43%), Positives = 14/32 (43%)
 Frame = +3

Query: 381 PNQIKPVPVNPTPSAHPVTTPGPGSVKQLVNF 476
           P     V  N TP    VTTP  G   QL NF
Sbjct: 753 PRPASGVTANQTPGTSAVTTPFAGINPQLANF 784


>SB_33433| Best HMM Match : Fasciclin (HMM E-Value=1.1e-09)
          Length = 454

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -2

Query: 401 HRFNLIRRLSRLYSNWSNNRFRRCLWRCYSRNW 303
           H  N I+R    +  W++ R R  LW   + NW
Sbjct: 260 HTLNYIKRDFDSFHKWNHPRKRESLWHFENGNW 292


>SB_32416| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0021)
          Length = 358

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +3

Query: 375 QPPNQIKPVPVNPTPSAHPVTTPGPGSVKQLVNFYDSQG 491
           QPP Q+ P P       HP  + GP   +    +++S G
Sbjct: 151 QPPYQVPPPPTPQPYHPHPYPSSGPMHHRHYRRWHNSNG 189


>SB_24958| Best HMM Match : S-methyl_trans (HMM E-Value=1.6e-40)
          Length = 560

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -2

Query: 260 NLSRARITTVLCATAFHINEINICI 186
           N  RA      CAT++H+  +N+C+
Sbjct: 38  NYKRAMKRKPCCATSYHLYSVNVCL 62


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,264,948
Number of Sequences: 59808
Number of extensions: 344723
Number of successful extensions: 970
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 967
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1572561250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)