Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_F13
(630 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g17510.1 68418.m02054 expressed protein 32 0.36
At2g26135.1 68415.m03136 zinc finger (C3HC4-type RING finger) fa... 31 0.48
At5g42220.1 68418.m05139 ubiquitin family protein contains INTER... 30 1.1
At4g18670.1 68417.m02762 leucine-rich repeat family protein / ex... 30 1.5
At1g77810.2 68414.m09061 galactosyltransferase family protein co... 29 1.9
At1g77810.1 68414.m09060 galactosyltransferase family protein co... 29 1.9
At2g02490.1 68415.m00188 hydroxyproline-rich glycoprotein family... 29 2.5
At1g35625.1 68414.m04426 protease-associated zinc finger (C3HC4-... 29 2.5
At1g33430.1 68414.m04138 galactosyltransferase family protein co... 29 2.5
At2g27380.1 68415.m03302 proline-rich family protein contains pr... 29 3.4
At1g27750.1 68414.m03391 ubiquitin system component Cue domain-c... 29 3.4
At1g62970.1 68414.m07110 DNAJ heat shock N-terminal domain-conta... 28 4.4
At4g26940.1 68417.m03876 galactosyltransferase family protein co... 28 5.9
At1g05170.1 68414.m00520 galactosyltransferase family protein 28 5.9
At2g32430.1 68415.m03962 galactosyltransferase family protein co... 27 7.8
At1g35230.1 68414.m04369 arabinogalactan-protein (AGP5) identica... 27 7.8
At1g05450.2 68414.m00553 protease inhibitor/seed storage/lipid t... 27 7.8
>At5g17510.1 68418.m02054 expressed protein
Length = 369
Score = 31.9 bits (69), Expect = 0.36
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +3
Query: 375 QPPNQIKPVPVNPTPSAHPVTTPGPGSVKQLVNFYDSQ 488
+PP I+ P+NP P +P TP P +Q NF Q
Sbjct: 66 RPPGLIQNRPINPPPQQNP--TPNPNLGQQTPNFQQQQ 101
>At2g26135.1 68415.m03136 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile PF01485:IBR domain
Length = 384
Score = 31.5 bits (68), Expect = 0.48
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = -2
Query: 497 SFTLAVVEIDKLFNTTRSWG--GYRVC*RCRIDWHRFNLIRRLSRLYSNWSNN 345
S ++V E+D+L + R G C +C++ WH +R +L+SN + N
Sbjct: 246 SALMSVTELDQLTGSKRCCVKCGESFCIKCKVPWHDNLSCKRYKKLHSNRTTN 298
>At5g42220.1 68418.m05139 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 879
Score = 30.3 bits (65), Expect = 1.1
Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Frame = +3
Query: 375 QP-PNQIKPVPVNPTPSAHPVTTP-GPGSVKQLVNFYDSQG-KGSPI 506
QP P+QI P+ T S++P+T P G G+ ++ +N + G GSP+
Sbjct: 402 QPFPHQISPLFTGATVSSNPLTGPVGLGTAQRHINIHIHAGTSGSPM 448
>At4g18670.1 68417.m02762 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 839
Score = 29.9 bits (64), Expect = 1.5
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +3
Query: 378 PPNQIKPVPVNPTPSAHPVTTPGPGSV 458
PP P V PTPS+ P +TP PG++
Sbjct: 600 PPVIPSPPIVGPTPSSPPPSTPTPGTL 626
>At1g77810.2 68414.m09061 galactosyltransferase family protein
contains Pfam profile PF01762: Galactosyltransferase
Length = 387
Score = 29.5 bits (63), Expect = 1.9
Identities = 8/37 (21%), Positives = 20/37 (54%)
Frame = -2
Query: 332 CLWRCYSRNWCRPRWNWNSGSLCRNLSRARITTVLCA 222
C W+ + + C + W+ +C+++ R +I +C+
Sbjct: 340 CRWKAEAGDVCVASFEWSCSGICKSVERMKIVHEVCS 376
>At1g77810.1 68414.m09060 galactosyltransferase family protein
contains Pfam profile PF01762: Galactosyltransferase
Length = 393
Score = 29.5 bits (63), Expect = 1.9
Identities = 8/37 (21%), Positives = 20/37 (54%)
Frame = -2
Query: 332 CLWRCYSRNWCRPRWNWNSGSLCRNLSRARITTVLCA 222
C W+ + + C + W+ +C+++ R +I +C+
Sbjct: 346 CRWKAEAGDVCVASFEWSCSGICKSVERMKIVHEVCS 382
>At2g02490.1 68415.m00188 hydroxyproline-rich glycoprotein family
protein related to LENOD2 [Lupinus luteus]
gi|296830|emb|CAA39050; and genefinder
Length = 302
Score = 29.1 bits (62), Expect = 2.5
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 378 PPNQIKPVPVNPTPSAHPVTTPGPGS 455
PP+Q K +PVN P P++ P P S
Sbjct: 263 PPHQNKKIPVNQYPRILPISHPVPPS 288
>At1g35625.1 68414.m04426 protease-associated zinc finger
(C3HC4-type RING finger) family protein contains Pfam
domain, PF02225: protease-associated (PA) domain and
Pfam domain, PF00097: Zinc finger, C3HC4 type (RING
finger); similar to ReMembR-H2 protein JR702
[Arabidopsis thaliana] gi|6942149|gb|AAF32326
Length = 279
Score = 29.1 bits (62), Expect = 2.5
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 405 VNPTPSAHPVTTPGPGSVKQLVNFYD 482
V P P+ +PGP S+ L +FYD
Sbjct: 245 VPPASETTPLISPGPNSITSLQSFYD 270
>At1g33430.1 68414.m04138 galactosyltransferase family protein
contains Pfam profile: PF01762 galactosyltransferase
Length = 395
Score = 29.1 bits (62), Expect = 2.5
Identities = 9/37 (24%), Positives = 18/37 (48%)
Frame = -2
Query: 332 CLWRCYSRNWCRPRWNWNSGSLCRNLSRARITTVLCA 222
C W+ + N C ++W+ +C+++ R CA
Sbjct: 346 CQWKAQAGNVCAASFDWSCSGICKSVDRMARVHRACA 382
>At2g27380.1 68415.m03302 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 761
Score = 28.7 bits (61), Expect = 3.4
Identities = 20/55 (36%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Frame = +3
Query: 378 PPNQIKPVPVNPTPSAHPVTTPGPGSVKQLVNFYDSQGKGSPIRP--YTYSQAVK 536
PP Q PV PTP+ P P P K Y K P++P TYS +K
Sbjct: 484 PPVQPPPVQKPPTPTYSPPVKP-PPIQKPPTPTYSPPIKPPPVKPPTPTYSPPIK 537
Score = 27.9 bits (59), Expect = 5.9
Identities = 20/55 (36%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Frame = +3
Query: 378 PPNQIKPVPVNPTPSAHPVTTPGPGSVKQLVNFYDSQGKGSPIRPYT--YSQAVK 536
PP + PV PTP+ P P P K Y K P++P T YS VK
Sbjct: 300 PPVKSPPVQKPPTPTYSPPIKPPPVQ-KPPTPTYSPPIKPPPVKPPTPIYSPPVK 353
>At1g27750.1 68414.m03391 ubiquitin system component Cue
domain-containing protein very low similarity to ASC-1
complex subunit P100 [Homo sapiens] GI:12061187; contains
Pfam profile PF02845: CUE domain
Length = 1973
Score = 28.7 bits (61), Expect = 3.4
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +3
Query: 396 PVPVNPTPSAHPVTTPGPGSVKQLVNFYDSQGKGSPI 506
P P+NPTP+++ +TP P S+ + DS G S +
Sbjct: 1127 PKPMNPTPTSN--STPFPVSLSSSLRQSDSSGASSRV 1161
>At1g62970.1 68414.m07110 DNAJ heat shock N-terminal
domain-containing protein low similarity to AHM1
[Triticum aestivum] GI:6691467; contains Pfam profile
PF00226: DnaJ domain
Length = 797
Score = 28.3 bits (60), Expect = 4.4
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
Frame = +3
Query: 375 QPPNQIKPVPVNPTPSAH---PVTTPGP 449
QPPN KP+PV+ P+ PV+ P P
Sbjct: 528 QPPNTSKPMPVSQPPTTSKPLPVSQPPP 555
>At4g26940.1 68417.m03876 galactosyltransferase family protein
contains Pfam profile: PF01762 galactosyltransferase
Length = 407
Score = 27.9 bits (59), Expect = 5.9
Identities = 8/30 (26%), Positives = 16/30 (53%)
Frame = -2
Query: 332 CLWRCYSRNWCRPRWNWNSGSLCRNLSRAR 243
C W+ + N C ++W+ +CR+ R +
Sbjct: 360 CEWKAQAGNICVASFDWSCSGICRSADRMK 389
>At1g05170.1 68414.m00520 galactosyltransferase family protein
Length = 404
Score = 27.9 bits (59), Expect = 5.9
Identities = 8/30 (26%), Positives = 16/30 (53%)
Frame = -2
Query: 332 CLWRCYSRNWCRPRWNWNSGSLCRNLSRAR 243
C W+ + N C ++W+ +CR+ R +
Sbjct: 357 CEWKAQAGNICVASFDWSCSGICRSADRIK 386
>At2g32430.1 68415.m03962 galactosyltransferase family protein
contains Pfam profile: PF01762 galactosyltransferase
Length = 409
Score = 27.5 bits (58), Expect = 7.8
Identities = 8/30 (26%), Positives = 15/30 (50%)
Frame = -2
Query: 332 CLWRCYSRNWCRPRWNWNSGSLCRNLSRAR 243
C W+ + N C ++W +CR+ R +
Sbjct: 362 CEWKAQAGNICVASFDWTCSGICRSADRIK 391
>At1g35230.1 68414.m04369 arabinogalactan-protein (AGP5) identical
to gi_3883128_gb_AAC77827
Length = 133
Score = 27.5 bits (58), Expect = 7.8
Identities = 12/25 (48%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Frame = +3
Query: 378 PPNQIKPVPVNPTPSAHP-VTTPGP 449
P I P+P PTPS P T P P
Sbjct: 26 PAPTISPLPATPTPSQSPRATAPAP 50
>At1g05450.2 68414.m00553 protease inhibitor/seed storage/lipid
transfer protein (LTP)-related similar to geranyl
diphosphate synthase large subunit [Mentha x piperita]
GI:6449052
Length = 205
Score = 27.5 bits (58), Expect = 7.8
Identities = 15/33 (45%), Positives = 17/33 (51%)
Frame = +3
Query: 390 IKPVPVNPTPSAHPVTTPGPGSVKQLVNFYDSQ 488
I VPV SA P+ TPGP S + DSQ
Sbjct: 102 IPGVPVQCKASAAPLPTPGPASFGPTTSPTDSQ 134
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,760,189
Number of Sequences: 28952
Number of extensions: 232715
Number of successful extensions: 847
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 826
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1285411824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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