Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_F12
(540 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC646.09c |int6|yin6|translation initiation factor eIF3e|Schiz... 116 2e-27
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 29 0.44
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca... 29 0.44
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac... 29 0.58
SPBC4C3.03 |||homoserine kinase |Schizosaccharomyces pombe|chr 2... 28 0.77
SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 28 0.77
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha... 26 3.1
SPCC553.09c |spb70|pol12|DNA polymerase alpha B-subunit|Schizosa... 26 3.1
SPBC8D2.15 |||mitochondrial lipoic acid synthetase |Schizosaccha... 26 3.1
SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c... 25 7.2
SPBC365.08c |||Der1-like |Schizosaccharomyces pombe|chr 2|||Manual 25 7.2
SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyc... 25 9.5
SPAC17A5.09c |||protein phosphatase regulatory subunit Glc9|Schi... 25 9.5
SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|ch... 25 9.5
>SPBC646.09c |int6|yin6|translation initiation factor
eIF3e|Schizosaccharomyces pombe|chr 2|||Manual
Length = 501
Score = 116 bits (280), Expect = 2e-27
Identities = 60/148 (40%), Positives = 92/148 (62%), Gaps = 3/148 (2%)
Frame = +2
Query: 83 KFDLTFKIGQYLDRHLVFPLLEFLAAKETYDQSELLQAKLEILSKTNMIDYVIDIRRML- 259
K+DL+ KI Q+LDRHL+FPLLEFL+ ++T+D ELLQAK ++L TNM DYV ++ L
Sbjct: 14 KYDLSQKIMQHLDRHLIFPLLEFLSLRQTHDPKELLQAKYDLLKDTNMTDYVANLWTNLH 73
Query: 260 --YPDEDTPEEIKSRRGVVLSELQELQDAVEPVLRLMQRDDVMKTVETMRDPKTLINHLT 433
+ DED +R VL EL EL++ V+ +L +++ D++ + +D + HL
Sbjct: 74 GGHTDEDMANAFAEKRRSVLQELSELEEEVQGILGVLENPDLIAALR--QDKGQNLQHL- 130
Query: 434 TNKEYEFKIEMIDCMYRLAKYRYECGNY 517
+ Y E I +Y+ A+++Y CGNY
Sbjct: 131 -QEHYNITPERIAVLYKFAQFQYNCGNY 157
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 29.1 bits (62), Expect = 0.44
Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
Frame = +2
Query: 269 EDTPEEIKSRRGVVLSELQELQDAVEPVLRLMQRDDVMKTVETMRDPKTLINHLTTNKE- 445
E + +I SR V++ E++ + V +DV+K + T+ PK +I L ++
Sbjct: 3735 ETSNAKISSRPNVLMPNQPEVKQYIPNVW-----NDVLKKLITILSPKVIITKLDFERDT 3789
Query: 446 --YEFKIEMIDCMYRLAK 493
+EF I+ ID ++ +K
Sbjct: 3790 FVHEFGIDSIDLIWLASK 3807
>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 2410
Score = 29.1 bits (62), Expect = 0.44
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = +2
Query: 386 TVETMRDPKTLINHLTTNKEYEFKIEMIDCMYRLAKYRYECGNY 517
TV T+ D ++ HL +F + + M++ ++YRY N+
Sbjct: 180 TVATLGDLIGMVGHLNDTSGVDFNLNEYNAMWKTSEYRYVDFNF 223
>SPAC18G6.05c |||translation elongation regulator Gcn1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2670
Score = 28.7 bits (61), Expect = 0.58
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +2
Query: 98 FKIGQYLDRHLVFPLLEF-LAAKETYDQSELLQAKLEILSK 217
F I +YL +L+ P LEF L A E Q + A ++ SK
Sbjct: 1218 FHISKYLSSNLLLPFLEFLLTASEAEAQIPVTDASQKVSSK 1258
>SPBC4C3.03 |||homoserine kinase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 338
Score = 28.3 bits (60), Expect = 0.77
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Frame = +2
Query: 209 LSKTNMIDYVIDIRRMLYPDEDTPEEIKSRRGVVLSEL-QELQDAVEPVLRLMQRDDVMK 385
LSK M+DYV+ I R +PD + G L EL +E ++A P DD++K
Sbjct: 120 LSKLQMMDYVLMIER--HPDNVMASMMGGFVGSFLRELSEEEKNAFSP-----SADDLLK 172
Query: 386 TVETMRDPKTL 418
PK+L
Sbjct: 173 NEALTLPPKSL 183
>SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 217
Score = 28.3 bits (60), Expect = 0.77
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = -3
Query: 469 NHLNFELILFVGC*VIYECFRISHCLDCLHNIISLH 362
+H++F LI F+ ++Y +SH L + ++IS H
Sbjct: 145 SHVHFHLIPFINFFLLYHQIILSHSLFHISHLISFH 180
>SPBC146.03c |cut3|smc4, smc4|condensin subunit
Cut3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1324
Score = 26.2 bits (55), Expect = 3.1
Identities = 26/97 (26%), Positives = 49/97 (50%), Gaps = 10/97 (10%)
Frame = +2
Query: 185 LLQAKLEILSKTNMIDYVIDIRRMLYPDEDTPEEIKSRRGVVLSELQELQDAVEPVLR-- 358
LL+ +I+ + + + + L +D E +SR +VLSE +L+D+ VL
Sbjct: 288 LLEYLEDIIGTSKYKPIIEENMQELSNSDDICAEKESRLKLVLSEKAKLEDSKNSVLSFL 347
Query: 359 ------LMQRDDVMKTV--ETMRDPKTLINHLTTNKE 445
M+++ + +T+ ET R+ KTL+ +L + E
Sbjct: 348 KDENELFMKQNQLYRTILYET-RNKKTLVQNLLNSLE 383
>SPCC553.09c |spb70|pol12|DNA polymerase alpha
B-subunit|Schizosaccharomyces pombe|chr 3|||Manual
Length = 574
Score = 26.2 bits (55), Expect = 3.1
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +2
Query: 161 KETYDQSELLQAKLEILSKTNMIDYVIDIRRMLYPDEDTPEEI 289
++ YD SE+L ++E+ S Y I + P E T E +
Sbjct: 163 QKLYDSSEVLDDRIELFSALTCRKYNISDEDLANPSELTQEPV 205
>SPBC8D2.15 |||mitochondrial lipoic acid synthetase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 370
Score = 26.2 bits (55), Expect = 3.1
Identities = 11/20 (55%), Positives = 15/20 (75%), Gaps = 2/20 (10%)
Frame = +1
Query: 283 GNQITQGC--CTVRTSRTPG 336
G+ T+GC C+V+TSR PG
Sbjct: 128 GDTCTRGCRFCSVKTSRRPG 147
>SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 767
Score = 25.0 bits (52), Expect = 7.2
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +2
Query: 278 PEEIKSRRGVVLSELQELQDAVE 346
P E +SR G+ SE EL+D +E
Sbjct: 7 PHEDRSRSGMSRSEAMELEDQLE 29
>SPBC365.08c |||Der1-like |Schizosaccharomyces pombe|chr 2|||Manual
Length = 224
Score = 25.0 bits (52), Expect = 7.2
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = -3
Query: 292 FDFLRCIFIRI*HSSYVNNIIYHVSFAKYLQFRL*QFRLIISLF 161
FDF+ I+ +S+Y+ N ++ + KY+ + L + L+I F
Sbjct: 71 FDFIMNIYFFYQYSTYLENFVFARNAKKYIIY-LVKVALLIDAF 113
>SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 585
Score = 24.6 bits (51), Expect = 9.5
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -1
Query: 75 LILIFQFCHKYSYPTKYV 22
+IL+F CHK Y TK +
Sbjct: 524 VILVFFICHKLYYKTKRI 541
>SPAC17A5.09c |||protein phosphatase regulatory subunit
Glc9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 310
Score = 24.6 bits (51), Expect = 9.5
Identities = 10/38 (26%), Positives = 21/38 (55%)
Frame = +2
Query: 170 YDQSELLQAKLEILSKTNMIDYVIDIRRMLYPDEDTPE 283
+D+ L +A+ + +K + + +R L PD++ PE
Sbjct: 60 WDEENLSKAEQQKSAKMKITEPKTPFQRFLLPDDEVPE 97
>SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 815
Score = 24.6 bits (51), Expect = 9.5
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 452 FKIEMIDCMYRLAKYRYECGNYVESASY 535
F IE I C+ L+ YRY C + +A Y
Sbjct: 311 FTIESIQCLLILSIYRY-CRTEISAAWY 337
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,949,145
Number of Sequences: 5004
Number of extensions: 36114
Number of successful extensions: 89
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -