Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_F12
(540 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0836 - 6795224-6795263,6796027-6796128,6796264-6796401,679... 119 2e-27
07_01_0482 + 3627980-3628270,3628785-3629012,3629116-3629237,362... 87 1e-17
07_03_0517 + 19000050-19000427,19000539-19000766,19001142-190012... 82 2e-16
01_01_0447 - 3327727-3328144,3328438-3328688,3328820-3328909,332... 27 7.2
12_01_1112 - 11866376-11866447,11866528-11866662,11866772-118669... 27 9.6
10_08_0997 - 22115005-22115823 27 9.6
05_07_0247 + 28643862-28644310,28645151-28645207,28645644-286489... 27 9.6
>07_01_0836 -
6795224-6795263,6796027-6796128,6796264-6796401,
6796790-6796932,6797388-6797607,6798087-6798208,
6798317-6798544,6798993-6799355
Length = 451
Score = 119 bits (286), Expect = 2e-27
Identities = 56/153 (36%), Positives = 97/153 (63%)
Frame = +2
Query: 80 SKFDLTFKIGQYLDRHLVFPLLEFLAAKETYDQSELLQAKLEILSKTNMIDYVIDIRRML 259
++ DLT ++ +D HLVFPLLEFL + Y E+L+AKL +LS TNM+DY +DI + L
Sbjct: 2 AEHDLTARMAGQMDCHLVFPLLEFLQERALYANKEILEAKLRLLSGTNMVDYAMDIHKSL 61
Query: 260 YPDEDTPEEIKSRRGVVLSELQELQDAVEPVLRLMQRDDVMKTVETMRDPKTLINHLTTN 439
+ ++ P+++ RR V+S L+ L +A P++ +Q + V+ +R K H+ +
Sbjct: 62 HDTDEVPDDMVRRRTDVVSRLRALDEATAPIVSFLQNQQL---VQELRPDKQYNLHMLQD 118
Query: 440 KEYEFKIEMIDCMYRLAKYRYECGNYVESASYL 538
+ ++ E I+ +Y+ AK++++CGNY ++A YL
Sbjct: 119 R-FQIGPEQIETLYQFAKFQFDCGNYSDAAVYL 150
>07_01_0482 +
3627980-3628270,3628785-3629012,3629116-3629237,
3629747-3629966,3630434-3630576,3631004-3631141,
3631275-3631380
Length = 415
Score = 86.6 bits (205), Expect = 1e-17
Identities = 38/91 (41%), Positives = 60/91 (65%)
Frame = +2
Query: 80 SKFDLTFKIGQYLDRHLVFPLLEFLAAKETYDQSELLQAKLEILSKTNMIDYVIDIRRML 259
++ DLT ++ +LD HLV PLLEFL + Y + E+L+AK+ +L TNM+DY +DI +
Sbjct: 2 AEHDLTARMAGHLDCHLVLPLLEFLQERHLYPEEEILEAKIRLLRGTNMVDYAMDIHKSR 61
Query: 260 YPDEDTPEEIKSRRGVVLSELQELQDAVEPV 352
Y +D PE++ RR V+S L L +A++ +
Sbjct: 62 YGTDDVPEDMVKRRAEVVSRLTSLGEAIDNI 92
>07_03_0517 +
19000050-19000427,19000539-19000766,19001142-19001221,
19001222-19001441,19001571-19001713,19002023-19002160,
19002295-19002376
Length = 422
Score = 82.2 bits (194), Expect = 2e-16
Identities = 49/162 (30%), Positives = 89/162 (54%), Gaps = 9/162 (5%)
Frame = +2
Query: 80 SKFDLTFKIGQYLDRHLVFPLLEFLAAK--ETYDQSELLQAKLEILSK-TNMIDYVIDIR 250
++ DLT ++ +++ HLVFPLLEFL + Y E+LQAKL +L + TNM+DY +D
Sbjct: 2 AEHDLTARMAAHMNCHLVFPLLEFLQWRPGRVYAVEEILQAKLRLLIQGTNMVDYAMDTH 61
Query: 251 RMLYPDED------TPEEIKSRRGVVLSELQELQDAVEPVLRLMQRDDVMKTVETMRDPK 412
++L+ D D P+++ RR V++ L L P++ ++ + P
Sbjct: 62 KLLHGDTDDDVVVPVPDDMVERRHEVVTRLGALAAPAAPIVSALKNHHL--------GPD 113
Query: 413 TLINHLTTNKEYEFKIEMIDCMYRLAKYRYECGNYVESASYL 538
N ++ ++ + I+ +Y+ AK++++CGNY ++A L
Sbjct: 114 KEHNIRMLHERFQIGPDQIEALYQYAKFQFDCGNYPDAAENL 155
>01_01_0447 -
3327727-3328144,3328438-3328688,3328820-3328909,
3329061-3329159,3329240-3329353,3329450-3329555,
3329661-3329740,3329913-3330173,3330271-3330507,
3330635-3330922
Length = 647
Score = 27.5 bits (58), Expect = 7.2
Identities = 20/61 (32%), Positives = 27/61 (44%)
Frame = +2
Query: 170 YDQSELLQAKLEILSKTNMIDYVIDIRRMLYPDEDTPEEIKSRRGVVLSELQELQDAVEP 349
YD + + +T D D L P EDT E RRGV L+E + +AV+
Sbjct: 363 YDPPQDPNVFIHRAGRTARYDQEGDAIVFLLPKEDTYVEFLKRRGVPLTERECSTNAVDI 422
Query: 350 V 352
V
Sbjct: 423 V 423
>12_01_1112 -
11866376-11866447,11866528-11866662,11866772-11866921,
11867263-11867338,11867426-11867559,11867655-11867747,
11868456-11868589,11868696-11868744,11869271-11869441,
11870291-11870452
Length = 391
Score = 27.1 bits (57), Expect = 9.6
Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 10/95 (10%)
Frame = +2
Query: 284 EIKSRRGVVLSELQELQDAVEPVLRLMQRDDVMKTVETMR-DPKTL---INH----LTTN 439
E ++R+ ++ LQ V P +R + D +++ E R P TL +N+ L+ N
Sbjct: 170 EAETRKHPSTDFMETLQKDVNPSMRAILIDWLVEVAEEYRLVPDTLYLTVNYIDRYLSGN 229
Query: 440 KEYEFKIEMID--CMYRLAKYRYECGNYVESASYL 538
+ +++++ CM AKY+ C VE Y+
Sbjct: 230 EINRQRLQLLGVACMLIAAKYKEICAPQVEEFCYI 264
>10_08_0997 - 22115005-22115823
Length = 272
Score = 27.1 bits (57), Expect = 9.6
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Frame = +2
Query: 221 NMIDYVIDIRRML--YPDEDTPEEIKSRRGVVLSELQ--ELQDAVEPVLRLMQRD 373
NM YV+D+RR L + PEE R+ V ++ + E + RL++++
Sbjct: 76 NMASYVLDLRRALAVFAGTGRPEEAVLRKNVAWADARRAEAVEIASAARRLLEKE 130
>05_07_0247 +
28643862-28644310,28645151-28645207,28645644-28648950,
28649069-28649144,28649356-28649426,28649524-28649589,
28649677-28649766,28649874-28650050,28650513-28650548
Length = 1442
Score = 27.1 bits (57), Expect = 9.6
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = -3
Query: 409 RISHCLDCLHNIISLHKPQHRLDC 338
R HC D +SL KPQH C
Sbjct: 490 RTDHCDDSGKRALSLEKPQHMQSC 513
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,515,662
Number of Sequences: 37544
Number of extensions: 197876
Number of successful extensions: 473
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 470
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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