Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_F12
(540 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_8134| Best HMM Match : TPR_3 (HMM E-Value=1.3) 62 3e-10
SB_42056| Best HMM Match : TPR_3 (HMM E-Value=1.3) 40 0.002
SB_4521| Best HMM Match : TPR_2 (HMM E-Value=1.7e-13) 31 0.46
SB_16643| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_12752| Best HMM Match : Borrelia_orfA (HMM E-Value=0.15) 29 1.8
SB_56066| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.6
SB_51222| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.6
SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0) 28 5.6
SB_46476| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.6
SB_39311| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.4
SB_14341| Best HMM Match : DUF1339 (HMM E-Value=4.4) 27 7.4
SB_41460| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.8
>SB_8134| Best HMM Match : TPR_3 (HMM E-Value=1.3)
Length = 399
Score = 62.1 bits (144), Expect = 3e-10
Identities = 34/104 (32%), Positives = 55/104 (52%)
Frame = +2
Query: 227 IDYVIDIRRMLYPDEDTPEEIKSRRGVVLSELQELQDAVEPVLRLMQRDDVMKTVETMRD 406
+D+ +D+ + LYPDE+ P + +R V+ EL++LQ EP++ D
Sbjct: 6 VDFAMDVYKGLYPDEEVPTSLVEKRVEVVKELKDLQAQTEPIINCFS------------D 53
Query: 407 PKTLINHLTTNKEYEFKIEMIDCMYRLAKYRYECGNYVESASYL 538
P+ + K EM+D +Y+ AK++YECGNY +A YL
Sbjct: 54 PEFTA---------QIKPEMLDVLYKFAKFQYECGNYSGAAEYL 88
>SB_42056| Best HMM Match : TPR_3 (HMM E-Value=1.3)
Length = 215
Score = 39.5 bits (88), Expect = 0.002
Identities = 14/25 (56%), Positives = 20/25 (80%)
Frame = +2
Query: 464 MIDCMYRLAKYRYECGNYVESASYL 538
M+D +Y+ AK++YECGNY +A YL
Sbjct: 1 MLDVLYKFAKFQYECGNYSGAAEYL 25
>SB_4521| Best HMM Match : TPR_2 (HMM E-Value=1.7e-13)
Length = 829
Score = 31.5 bits (68), Expect = 0.46
Identities = 21/66 (31%), Positives = 32/66 (48%)
Frame = +2
Query: 341 VEPVLRLMQRDDVMKTVETMRDPKTLINHLTTNKEYEFKIEMIDCMYRLAKYRYECGNYV 520
+E ++L + V +T T + L N L KEY+ +E+ YRL K R G +
Sbjct: 708 MEKAIKLQKELGVGETEHTATFQRNLANVLLALKEYDLALEVAQESYRLRKER--LGTHP 765
Query: 521 ESASYL 538
E+A L
Sbjct: 766 ETARIL 771
>SB_16643| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 554
Score = 29.5 bits (63), Expect = 1.8
Identities = 18/65 (27%), Positives = 32/65 (49%)
Frame = +2
Query: 155 AAKETYDQSELLQAKLEILSKTNMIDYVIDIRRMLYPDEDTPEEIKSRRGVVLSELQELQ 334
+ K D E+LQ+ E KTN + ++RM+ +E IKS++ V S++ ++
Sbjct: 373 SCKGASDPEEVLQSSEEKAGKTNEASH--PLKRMIKTNEALQSPIKSKKDEVRSKVSTIE 430
Query: 335 DAVEP 349
P
Sbjct: 431 ATQAP 435
>SB_12752| Best HMM Match : Borrelia_orfA (HMM E-Value=0.15)
Length = 1774
Score = 29.5 bits (63), Expect = 1.8
Identities = 21/101 (20%), Positives = 51/101 (50%)
Frame = +2
Query: 176 QSELLQAKLEILSKTNMIDYVIDIRRMLYPDEDTPEEIKSRRGVVLSELQELQDAVEPVL 355
Q+E+ +A E+ + + + I L + + PE ++RG+ + + V V
Sbjct: 1041 QAEISKAISEVTENDDKEN--VSIMNELKKNVEEPERFHNQRGI--DHETDFRKMVRAVF 1096
Query: 356 RLMQRDDVMKTVETMRDPKTLINHLTTNKEYEFKIEMIDCM 478
+++ D+ + ++++++ ++ + NKE E KIE ++ M
Sbjct: 1097 AIIE--DLKERIKSVKENTSISTEVLFNKEMEKKIEELEGM 1135
>SB_56066| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 654
Score = 27.9 bits (59), Expect = 5.6
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Frame = +2
Query: 122 RHLVFPLLEFLAAKETYDQSE--LLQAKLEILSKTNMIDYVIDIRRMLYPDEDTPEEIKS 295
+ ++ P+L L + E + +E L K+ + S N +YV+ + Y D + E K
Sbjct: 243 KSVINPVLNHLNSSELWVPNEFALKVFKIIMFSVQNQYNYVVIQMLLSYLDASSKESAKK 302
Query: 296 RRGVV 310
+ GVV
Sbjct: 303 KAGVV 307
>SB_51222| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2520
Score = 27.9 bits (59), Expect = 5.6
Identities = 19/69 (27%), Positives = 40/69 (57%), Gaps = 6/69 (8%)
Frame = +2
Query: 296 RRGVVLSELQELQDAVEPVLRLMQRDDVMKTVETMRDPK-TLINHLTT-----NKEYEFK 457
R +L +++EL V+ + + +++ ++K ++ + D K TLI T NKE+E K
Sbjct: 1856 REKELLQQVEELSTQVKTLEQRIEQLVIVK-MDALHDQKATLIEEHNTAIEKLNKEHEAK 1914
Query: 458 IEMIDCMYR 484
+E ++ +Y+
Sbjct: 1915 LESVERLYK 1923
>SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)
Length = 2858
Score = 27.9 bits (59), Expect = 5.6
Identities = 16/75 (21%), Positives = 34/75 (45%)
Frame = +2
Query: 308 VLSELQELQDAVEPVLRLMQRDDVMKTVETMRDPKTLINHLTTNKEYEFKIEMIDCMYRL 487
++ +++ELQ+ E QR+D + E +R +L+ + E +M + +
Sbjct: 2663 LIQQMRELQNQSEKYRFQKQREDCEREKEHLRQQVSLMRSKGNTQSEELIQQMRELQNQS 2722
Query: 488 AKYRYECGNYVESAS 532
KYR++ + S
Sbjct: 2723 EKYRFQVDDLTRQLS 2737
>SB_46476| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 381
Score = 27.9 bits (59), Expect = 5.6
Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 6/56 (10%)
Frame = +2
Query: 206 ILSKTN---MIDY--VIDIRRMLYPDEDTPE-EIKSRRGVVLSELQELQDAVEPVL 355
+LSKT+ M+ Y +DI + + E EI+ RGV+L E+QE+ +E V+
Sbjct: 20 VLSKTHQLLMVLYSSAVDILADIIQNSTLGEAEIERERGVILREMQEVDTQLEEVV 75
>SB_39311| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 916
Score = 27.5 bits (58), Expect = 7.4
Identities = 13/72 (18%), Positives = 36/72 (50%)
Frame = +2
Query: 185 LLQAKLEILSKTNMIDYVIDIRRMLYPDEDTPEEIKSRRGVVLSELQELQDAVEPVLRLM 364
L+Q ++E++ K Y+ D Y +DT + + + L+ ++ + + +
Sbjct: 333 LIQYEIEVVYKKGKEMYIADTLSRTYLPDDTEHKDSFAKINAVGHLRIREERLRQLKKAT 392
Query: 365 QRDDVMKTVETM 400
+ DD ++T++++
Sbjct: 393 ETDDTLQTLKSV 404
>SB_14341| Best HMM Match : DUF1339 (HMM E-Value=4.4)
Length = 801
Score = 27.5 bits (58), Expect = 7.4
Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Frame = +2
Query: 251 RMLYPDEDTPEEIKSRRGVVLSELQELQDAVEPVLR-LMQRDDVMKTVETMRDPKTLINH 427
R LYP+ + ++ V + ELQ A+ R L+++ + T+ + D KTL+ H
Sbjct: 511 RELYPETEPAGLFVAKVDVSEVPMAELQAALPAFERQLLRKGYGLYTISGVLDRKTLVEH 570
Query: 428 LTTNKEY 448
L ++ +
Sbjct: 571 LCASEGF 577
>SB_41460| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1669
Score = 27.1 bits (57), Expect = 9.8
Identities = 13/72 (18%), Positives = 35/72 (48%)
Frame = +2
Query: 185 LLQAKLEILSKTNMIDYVIDIRRMLYPDEDTPEEIKSRRGVVLSELQELQDAVEPVLRLM 364
L+Q +E++ K Y+ D Y +DT + + + L+ ++ + + +
Sbjct: 669 LIQYDIEVVYKKGKEMYIADTSSRAYLPDDTEHKDSFAKINAVGHLRIREERLRQLKKAT 728
Query: 365 QRDDVMKTVETM 400
+ DD ++T++++
Sbjct: 729 EMDDTLQTLKSV 740
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,260,743
Number of Sequences: 59808
Number of extensions: 251415
Number of successful extensions: 673
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 673
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1227799733
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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