Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_F11
         (438 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   1.3  
SPAC13G7.07 |arb2||argonaute binding protein 2|Schizosaccharomyc...    27   1.3  
SPCC1919.02 |||pig-X|Schizosaccharomyces pombe|chr 3|||Manual          27   1.7  
SPBC6B1.05c |||ubiquitin-like conjugating enzyme|Schizosaccharom...    26   2.2  
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual    25   5.1  
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch...    25   5.1  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    25   6.7  
SPBC29A3.11c |||mitochondrial carboxylic acid transporter|Schizo...    25   6.7  
SPAC458.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   6.7  
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc...    24   8.9  
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo...    24   8.9  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    24   8.9  

>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
 Frame = +2

Query: 227 CERRTPQQMSGGSPGLGSHMHVMEVKESRASP-LPVPSQQPNATSTQQAPQPQICAGCS 400
           C   T    +GGS  L + +       S +S  +P+P    ++T T  +P P     C+
Sbjct: 172 CTTSTSIPPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCT 230



 Score = 25.8 bits (54), Expect = 2.9
 Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
 Frame = +2

Query: 227 CERRTPQQMSGGSPGLGSHMHVMEVKESRASP-LPVPSQQPNATSTQQAPQPQICAGCS 400
           C   T    +GGS  L + +       S +S  +P+P    ++T T   P P     C+
Sbjct: 115 CTTSTSIPPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSNPLPTTSTSCT 173



 Score = 25.4 bits (53), Expect = 3.9
 Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = +2

Query: 254 SGGSPGLGSHMHVMEVKESRASP-LPVPSQQPNATSTQQAPQPQICAGCS 400
           +GGS  L + +       S +S  +P+P    ++T T  +P P     C+
Sbjct: 237 TGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCT 286


>SPAC13G7.07 |arb2||argonaute binding protein 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 266

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -3

Query: 271 AWTTAAHLLRRSSLTLHETPARQLAWLY 188
           +WT    LL R S+ L  +P+   +W+Y
Sbjct: 67  SWTLQNSLLTRISIPLESSPSEPHSWIY 94


>SPCC1919.02 |||pig-X|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 332

 Score = 26.6 bits (56), Expect = 1.7
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +1

Query: 1   PK*VYVITPITNTPVAIAKNFSVLWNNINI 90
           PK V+++   T   ++IAK F  + NNINI
Sbjct: 28  PKGVWILRNNTIDSLSIAKQFREIKNNINI 57


>SPBC6B1.05c |||ubiquitin-like conjugating
           enzyme|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 649

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -1

Query: 84  YIVPQHRKVFRDRNRSVCYRCNNV 13
           ++V +H  V +  NR  CY CN++
Sbjct: 482 WLVMRHGSVLQKENRLGCYFCNDI 505


>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 973

 Score = 25.0 bits (52), Expect = 5.1
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2

Query: 86  IFYANTTMNIIFTCCD 133
           IFY ++T+  + TCCD
Sbjct: 879 IFYYDSTLKRVVTCCD 894


>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
           Zds1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 938

 Score = 25.0 bits (52), Expect = 5.1
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 311 RASPLPVPSQQPNATSTQQA 370
           +A P+  PS+ PN TS  +A
Sbjct: 764 KAKPISAPSELPNTTSVAEA 783


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 320 PLPVPSQQPNATSTQQAPQP 379
           P P P+  P +T+T Q P P
Sbjct: 240 PPPPPTLPPQSTNTSQLPMP 259


>SPBC29A3.11c |||mitochondrial carboxylic acid
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -3

Query: 262 TAAHLLRRSSLTLHETPARQLAWLYFVI 179
           TA  +++R++L   +TP   + WL F I
Sbjct: 237 TAKSIVQRNTLLSIKTPLSSIPWLSFTI 264


>SPAC458.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 340

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = +1

Query: 73  WNNINILREYN 105
           WNN+N+L +YN
Sbjct: 204 WNNLNVLMKYN 214


>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
           Prp11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1014

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 13/50 (26%), Positives = 21/50 (42%)
 Frame = +2

Query: 233 RRTPQQMSGGSPGLGSHMHVMEVKESRASPLPVPSQQPNATSTQQAPQPQ 382
           +  P Q  G SP   SH H  E +    +     +     ++T+  PQP+
Sbjct: 89  KNIPDQYIGRSPRPTSHRHAEEKEVDNKTKSDETNPVLQGSATEIKPQPR 138


>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 9   SVRYYTDNKHSGCDREKLFCV 71
           ++RY  DN+HSG  R  LF V
Sbjct: 466 ALRYREDNEHSGLVRICLFIV 486


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
 Frame = +2

Query: 266  PGLGSHMHVMEVKESRASPLPVPSQQPNA-TSTQQAPQPQICAG 394
            P L S    + +  + A P+PVPS  P     T   P P+  +G
Sbjct: 1015 PKLSSKAPPVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSG 1058


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,896,378
Number of Sequences: 5004
Number of extensions: 37962
Number of successful extensions: 129
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)