Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_F11
(438 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56622| Best HMM Match : ImpA-rel_N (HMM E-Value=1) 29 2.2
SB_534| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_50961| Best HMM Match : Trypsin (HMM E-Value=0) 28 2.9
SB_48719| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.9
SB_35812| Best HMM Match : Atrophin-1 (HMM E-Value=0.23) 28 3.9
SB_33704| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.9
SB_59386| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.1
SB_17581| Best HMM Match : HHH (HMM E-Value=4.2) 27 6.8
SB_13709| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.8
SB_3371| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.9
SB_43994| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.9
SB_40118| Best HMM Match : DREPP (HMM E-Value=0.085) 27 8.9
SB_8672| Best HMM Match : PKD_channel (HMM E-Value=1.4e-38) 27 8.9
>SB_56622| Best HMM Match : ImpA-rel_N (HMM E-Value=1)
Length = 529
Score = 28.7 bits (61), Expect = 2.2
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Frame = -3
Query: 295 HDVHVRP*AWTTA--AHLLRRSSLTLHETPARQLAWLYFVISLLKTLTAESLHMEKITT 125
H HVR + A AH+ L H+T R L +L + L+TLT + H + T
Sbjct: 396 HKTHVRTLTYLAAHKAHVRTLMYLAAHKTHVRTLTYLATHKTRLRTLTYLAAHKTHVRT 454
Score = 26.6 bits (56), Expect = 8.9
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Frame = -3
Query: 295 HDVHVRP*AWTTAAHLLRRSSLTL---HETPARQLAWLYFVISLLKTLTAESLHMEKITT 125
H HVR + AAH R +LT H+T R L +L + ++TLT + H + T
Sbjct: 357 HKTHVRTLTYL-AAHKTRLRTLTYLATHKTHVRTLTYLAAHKTHVRTLTYLAAHKAHVRT 415
>SB_534| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 948
Score = 28.7 bits (61), Expect = 2.2
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Frame = -3
Query: 295 HDVHVRP*AWTTA--AHLLRRSSLTLHETPARQLAWLYFVISLLKTLTAESLHMEKITT 125
H HVR + A H+ + L H+T R L +L + L+TLT + H ++ T
Sbjct: 720 HKTHVRTLTYLAAHKTHVRTLTYLAAHKTHVRTLTYLAAHKTRLRTLTYLAAHKTRLRT 778
Score = 28.3 bits (60), Expect = 2.9
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Frame = -3
Query: 295 HDVHVRP*AWTTA--AHLLRRSSLTLHETPARQLAWLYFVISLLKTLTAESLHMEKITT 125
H HVR + A H+ + L H+T R L +L + L+TLT + H ++ T
Sbjct: 733 HKTHVRTLTYLAAHKTHVRTLTYLAAHKTRLRTLTYLAAHKTRLRTLTYLAAHKTRLRT 791
Score = 27.9 bits (59), Expect = 3.9
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Frame = -3
Query: 295 HDVHVRP*AWTTAAHLLRRSSLTL---HETPARQLAWLYFVISLLKTLTAESLHMEKITT 125
H HVR + AAH R +LT H+T R L +L + L+TLT + H + T
Sbjct: 746 HKTHVRTLTYL-AAHKTRLRTLTYLAAHKTRLRTLTYLAAHKTRLRTLTYLAAHKTHVRT 804
Score = 26.6 bits (56), Expect = 8.9
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Frame = -3
Query: 295 HDVHVRP*AWTTAAHLLRRSSLTL---HETPARQLAWLYFVISLLKTLTAESLHMEKITT 125
H HVR + AAH R +LT H+T R L +L + ++TLT + H + T
Sbjct: 577 HKTHVRTLTYL-AAHKTRLRTLTYLATHKTHVRTLTYLAAHKTHVRTLTYLAAHKTHVRT 635
>SB_50961| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 1007
Score = 28.3 bits (60), Expect = 2.9
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +2
Query: 92 YANTTMNIIFTCCDFFHV*RLRRKCFQE 175
Y N NI+ C DF + RR+CF E
Sbjct: 671 YLNWIDNIVKNCLDFLNTTIWRRRCFDE 698
>SB_48719| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1880
Score = 28.3 bits (60), Expect = 2.9
Identities = 19/48 (39%), Positives = 22/48 (45%)
Frame = -3
Query: 421 ISFRYHFTATGADLWLRSLLCRCGIRLL*WHRERGSARFFHLHDVHVR 278
+SF Y TGAD W LL R L RERG F+ D + R
Sbjct: 581 VSFDYDVPGTGADSW--KLLLRSLTTL---KRERGQNSFYFQQDANCR 623
>SB_35812| Best HMM Match : Atrophin-1 (HMM E-Value=0.23)
Length = 4240
Score = 27.9 bits (59), Expect = 3.9
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +2
Query: 317 SPLPVPSQQPNATSTQQAPQP 379
S P PSQQPN+TS + QP
Sbjct: 819 SAQPKPSQQPNSTSEPRPQQP 839
>SB_33704| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 677
Score = 27.9 bits (59), Expect = 3.9
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = +2
Query: 257 GGSPGLGSHMHVMEVKES-RASPLPVPSQQPNATSTQ 364
GG+P G +ES R+ P P SQQP TQ
Sbjct: 559 GGAPSYGRQSPAGSSQESVRSQPSPTSSQQPEPQVTQ 595
>SB_59386| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1037
Score = 27.5 bits (58), Expect = 5.1
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +3
Query: 303 KNRALPRSRCHHSSLMPHLHNRLR 374
+ RAL R++ H +MP LHNR +
Sbjct: 949 RRRALTRAKECHPRVMPRLHNRFQ 972
>SB_17581| Best HMM Match : HHH (HMM E-Value=4.2)
Length = 361
Score = 27.1 bits (57), Expect = 6.8
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = +2
Query: 293 MEVKESRA-SPLPVPSQQPNATSTQQAPQPQ 382
+ VK S P P P+ +P A TQ AP PQ
Sbjct: 18 LNVKSSDIPKPPPKPAPRPQAAITQTAPGPQ 48
>SB_13709| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 489
Score = 27.1 bits (57), Expect = 6.8
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +3
Query: 3 EVSVRYYTDNKHSGCDREKLFCV 71
+VS+ Y ++ SGCD +L C+
Sbjct: 427 DVSIAYSHSSQRSGCDDARLLCI 449
>SB_3371| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1135
Score = 26.6 bits (56), Expect = 8.9
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = -3
Query: 268 WTTAAHLLRRSSLTLHETPARQLAWLYFVISLLKTLTAESLHM 140
WT R HE PAR++AW L TL +L++
Sbjct: 1089 WTGILQFSRVFFFLGHENPARKIAWCDLWERLRSTLDLRALYI 1131
>SB_43994| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 403
Score = 26.6 bits (56), Expect = 8.9
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +2
Query: 302 KESRASPLPVPSQQPNATSTQQAPQP 379
K S+ P P P +QP +T+ Q+ P
Sbjct: 305 KGSKNKPKPPPGEQPESTTPQEPSDP 330
>SB_40118| Best HMM Match : DREPP (HMM E-Value=0.085)
Length = 512
Score = 26.6 bits (56), Expect = 8.9
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = +2
Query: 242 PQQMSGGSPGLGSHMHVMEVKESRASPLPVPSQQPNATSTQQAPQPQ 382
P++ G S K S AS +P P ++P+ TS+ P P+
Sbjct: 250 PRKDDGSEGSAPSEPVASPRKPSLASAVPQPFKRPSFTSSHPQPHPR 296
>SB_8672| Best HMM Match : PKD_channel (HMM E-Value=1.4e-38)
Length = 1523
Score = 26.6 bits (56), Expect = 8.9
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = -3
Query: 145 HMEK-ITTRKNYVHGCIRVKYLYCSTTQKSFSR 50
H+ K +TT+ ++ C+ VK Y T FSR
Sbjct: 1457 HIRKALTTKSKFLKACVFVKVTYPCRTNNIFSR 1489
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,181,870
Number of Sequences: 59808
Number of extensions: 332928
Number of successful extensions: 1068
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1056
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 847047381
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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