Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_F11
         (438 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g70390.1 68414.m08097 F-box family protein contains Pfam prof...    29   1.8  
At5g19910.1 68418.m02369 SOH1 family protein contains Pfam profi...    28   2.4  
At1g09970.2 68414.m01124 leucine-rich repeat transmembrane prote...    28   2.4  
At1g09970.1 68414.m01123 leucine-rich repeat transmembrane prote...    28   2.4  
At1g08420.1 68414.m00931 kelch repeat-containing protein / serin...    28   3.2  
At4g39680.1 68417.m05614 SAP domain-containing protein contains ...    27   5.5  
At5g43440.1 68418.m05311 2-oxoglutarate-dependent dioxygenase, p...    27   7.3  
At2g03680.1 68415.m00327 expressed protein Alternative splicing ...    27   7.3  
At5g66070.1 68418.m08324 zinc finger (C3HC4-type RING finger) fa...    26   9.7  
At5g23730.1 68418.m02782 transducin family protein / WD-40 repea...    26   9.7  
At4g24490.1 68417.m03510 geranylgeranyl transferase alpha subuni...    26   9.7  
At3g19950.1 68416.m02525 zinc finger (C3HC4-type RING finger) fa...    26   9.7  

>At1g70390.1 68414.m08097 F-box family protein contains Pfam
           profile: PF00646 F-box domain
          Length = 332

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +1

Query: 289 RHGGERIARFPAP-GAITAA*CHIYTTGSATTDLRRLQ 399
           R+G E +   P P G   +  CH+YT GS     RR +
Sbjct: 115 RNGSEVVIHNPGPRGFKPSRKCHVYTMGSGKNSWRRFK 152


>At5g19910.1 68418.m02369 SOH1 family protein contains Pfam profile:
           PF05669 SOH1
          Length = 196

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 14/34 (41%), Positives = 16/34 (47%)
 Frame = +2

Query: 311 RASPLPVPSQQPNATSTQQAPQPQICAGCSKVIT 412
           R  P PVP Q P A ST   P P   A  S  ++
Sbjct: 133 RPLPEPVPPQPPVAPSTSLPPAPSATAALSPALS 166


>At1g09970.2 68414.m01124 leucine-rich repeat transmembrane protein
           kinase, putative Similar to A. thaliana receptor-like
           protein kinase (gb|RLK5_ARATH). ESTs
           gb|ATTS0475,gb|ATTS4362 come from this gene isoform
           contains a TG acceptor site at intron.
          Length = 977

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = -3

Query: 100 IRVKYLYCSTTQKSFSRSQP 41
           + VK++ CS+TQK+FS + P
Sbjct: 691 VAVKHIRCSSTQKNFSSAMP 710


>At1g09970.1 68414.m01123 leucine-rich repeat transmembrane protein
           kinase, putative Similar to A. thaliana receptor-like
           protein kinase (gb|RLK5_ARATH). ESTs
           gb|ATTS0475,gb|ATTS4362 come from this gene isoform
           contains a TG acceptor site at intron.
          Length = 976

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = -3

Query: 100 IRVKYLYCSTTQKSFSRSQP 41
           + VK++ CS+TQK+FS + P
Sbjct: 691 VAVKHIRCSSTQKNFSSAMP 710


>At1g08420.1 68414.m00931 kelch repeat-containing protein /
           serine/threonine phosphoesterase family protein contains
           Pfam profiles: PF00149 calcineurin-like phosphoesterase,
           PF01344 kelch motif
          Length = 1018

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 20/47 (42%), Positives = 22/47 (46%)
 Frame = +2

Query: 230 ERRTPQQMSGGSPGLGSHMHVMEVKESRASPLPVPSQQPNATSTQQA 370
           ER TPQQM+  SP            E  + P P PS    ATS QQA
Sbjct: 30  ERETPQQMNDQSP----------PPEGGSVPTPPPSDPNPATSQQQA 66


>At4g39680.1 68417.m05614 SAP domain-containing protein contains
           Pfam domain PF02037: SAP domain
          Length = 633

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +2

Query: 254 SGGSPGLGSHMHVMEVKESRASPL-PVPSQQPNATSTQQAP 373
           +GG   +   +   EVKE   +PL P P  QP A +  + P
Sbjct: 520 NGGRHLIAEFVRAEEVKEKLEAPLPPQPQHQPQAQTLSRPP 560


>At5g43440.1 68418.m05311 2-oxoglutarate-dependent dioxygenase,
           putative similar to 2A6 (GI:599622) and tomato ethylene
           synthesis regulatory protein E8 (SP|P10967)
          Length = 365

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -1

Query: 312 RDSFTSMTCMCDP-KPGLPPLICCGVRLSH 226
           +DSFT  TC  DP KP   PL C  V + +
Sbjct: 152 KDSFTCYTCPQDPLKPEEIPLACRDVVIEY 181


>At2g03680.1 68415.m00327 expressed protein Alternative splicing
           exists based on EST evidence
          Length = 119

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +2

Query: 317 SPLPVPSQQPNATSTQQAPQPQICAGCSKVIT 412
           +P PVP+ +P  T +   P P + A  +  +T
Sbjct: 24  APKPVPAPRPAPTESNNGPAPPVTAVTATALT 55


>At5g66070.1 68418.m08324 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 221

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +3

Query: 309 RALPRSRCHHSSLMPHLHNRLRNHRSAPV 395
           R+LP   CHH   +P +   LR H S P+
Sbjct: 190 RSLPH--CHHMFHLPCIDKWLRRHASCPL 216


>At5g23730.1 68418.m02782 transducin family protein / WD-40 repeat
           family protein contains similarity to photomorphogenesis
           repressor protein; contains Pfam PF00400: WD domain,
           G-beta repeat (5 copies)
          Length = 243

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 8/36 (22%)
 Frame = -1

Query: 408 ITLLQPAQICGCGACCVD--------VALGCCDGTG 325
           + +++PA IC    CCV+        VA+GC D  G
Sbjct: 59  VGVVRPAGICRSAVCCVEFDPSGGPAVAVGCADRKG 94


>At4g24490.1 68417.m03510 geranylgeranyl transferase alpha
           subunit-related / RAB geranylgeranyltransferase alpha
           subunit-related low similarity to SP|Q08602 [Rattus
           norvegicus]
          Length = 683

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
 Frame = -1

Query: 162 LRRSLYTWKKSQHVKI-----MFMVVFA*NIYIVPQHRKVFRDRNRSVCYRCNNV 13
           L  S Y + K +H K      MFM V + +   + +H   +RD N  VC R NN+
Sbjct: 473 LDSSHYQYYKDEHSKAFLHKRMFMQVTS-SSESLSRHLLRYRDMNNLVCLRLNNL 526


>At3g19950.1 68416.m02525 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 328

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = +2

Query: 332 PSQQPNATSTQQAPQ 376
           PS QP A STQQ PQ
Sbjct: 105 PSMQPQARSTQQNPQ 119


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,161,595
Number of Sequences: 28952
Number of extensions: 213270
Number of successful extensions: 701
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 700
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 692941200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)