Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_F10
(516 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF... 29 0.55
SPCC320.13c |ark1|aim1, SPCC330.16|aurora-B kinase Ark1|Schizosa... 28 0.95
SPBC428.13c |mob1||protein kinase regulator Mob1|Schizosaccharom... 27 1.3
SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha su... 26 2.9
SPCC1393.02c |||non-specific DNA binding protein Spt2 |Schizosac... 26 3.8
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig... 25 5.1
SPBC18H10.20c |||conserved fungal protein|Schizosaccharomyces po... 25 5.1
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ... 25 6.7
SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit Alp4|... 25 8.9
>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
XPF|Schizosaccharomyces pombe|chr 3|||Manual
Length = 892
Score = 28.7 bits (61), Expect = 0.55
Identities = 18/98 (18%), Positives = 43/98 (43%), Gaps = 1/98 (1%)
Frame = +2
Query: 86 PTREYRRQEDRVYSSPKTQTQSASINDQIEREIIIDSLFVKHLSPNNGQTKNIQRVTTVD 265
P + RR ++ +T + + ND R++ ++ + + HLS +D
Sbjct: 464 PPSKRRRVRGGNNATSRTTSDNTDANDSFSRDLRLEKILLSHLSKRYEPEVGNDAFEVID 523
Query: 266 PMVTT-TAATNGDRRHCQCVPYDHCNINYVVIYENDPD 376
+ + NG+R + ++ YV+++++DP+
Sbjct: 524 DFNSIYIYSYNGERDE---LVLNNLRPRYVIMFDSDPN 558
>SPCC320.13c |ark1|aim1, SPCC330.16|aurora-B kinase
Ark1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 355
Score = 27.9 bits (59), Expect = 0.95
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +3
Query: 108 KKTGFIAALKPRHKAPV*MTKSKEKL 185
KKTGFI ALK HK+ + +K ++++
Sbjct: 109 KKTGFIVALKTLHKSELVQSKIEKQV 134
>SPBC428.13c |mob1||protein kinase regulator
Mob1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 210
Score = 27.5 bits (58), Expect = 1.3
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +2
Query: 83 GPTREYRRQEDRVYSSPKTQTQSASINDQIE 175
GP+ EY Q+D++Y+ P + IN+ ++
Sbjct: 88 GPSYEYYWQDDKIYTKPTRMSAPDYINNLLD 118
>SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha
subunit Tfa1 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 448
Score = 26.2 bits (55), Expect = 2.9
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +2
Query: 224 NGQTKNIQRVTTVDPMVTTTAATNGD 301
N +TK+I+ ++ P+V+T T+GD
Sbjct: 392 NKRTKSIEENNSLPPIVSTNGITDGD 417
>SPCC1393.02c |||non-specific DNA binding protein Spt2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 406
Score = 25.8 bits (54), Expect = 3.8
Identities = 26/109 (23%), Positives = 43/109 (39%), Gaps = 8/109 (7%)
Frame = +2
Query: 44 KVTMSDETLVNLY-GPTREYRRQEDRVYSSPKTQTQSASINDQIEREII-------IDSL 199
K + LV L GP R+ +R V + Q++SI+ + + S
Sbjct: 224 KARYASNGLVQLQTGPKRD-KRSAGEVQDEIMKRRQNSSISQAATPRTVSNSETSYVGSP 282
Query: 200 FVKHLSPNNGQTKNIQRVTTVDPMVTTTAATNGDRRHCQCVPYDHCNIN 346
+K PN+ ++ N R T+ +T A RH + V D +N
Sbjct: 283 ALKQSKPNSLKSNNTSRKTSASSAITKPKARPHTSRHDEFVVSDDDELN 331
>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
E3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1647
Score = 25.4 bits (53), Expect = 5.1
Identities = 12/46 (26%), Positives = 21/46 (45%)
Frame = +2
Query: 32 TRSYKVTMSDETLVNLYGPTREYRRQEDRVYSSPKTQTQSASINDQ 169
+ SY+ T SD + + + +Y Q+D VY T N++
Sbjct: 186 SNSYETTYSDSSNYHTSTDSSQYNDQDDHVYDDTNDGTDDDINNNE 231
>SPBC18H10.20c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 361
Score = 25.4 bits (53), Expect = 5.1
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -3
Query: 97 FTCRPIEIYQCFVRHRDLVRPR 32
F+C+P E RHRDLV+PR
Sbjct: 230 FSCQPCE------RHRDLVKPR 245
>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1337
Score = 25.0 bits (52), Expect = 6.7
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = +2
Query: 170 IEREIIIDSLFVKHLSPNNGQTKNIQRVTTVDPMVTTTAATNGD 301
++ + + D L V ++S N QT N P+V T+GD
Sbjct: 1201 LDHKFVADQLAVLYMSSNALQTGNPLPQVVPSPLVDRFFTTSGD 1244
>SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit
Alp4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 784
Score = 24.6 bits (51), Expect = 8.9
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +2
Query: 362 ENDPDITGTGRIDIRFDDDGCQENMKLCCRIPKPLT 469
E++ GT ++ D +G E M+LC ++P PL+
Sbjct: 543 EHNRSTQGTSKVGSDKDINGF-ETMQLCYKVPFPLS 577
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,932,705
Number of Sequences: 5004
Number of extensions: 38104
Number of successful extensions: 92
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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