Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_F10
(516 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0050 - 421227-421243,421508-421569,421574-421725,422310-42... 28 5.1
03_05_0923 + 28848925-28849272,28849636-28849869,28849965-288501... 28 5.1
10_01_0171 + 1917520-1918056,1919201-1919336,1921873-1922060,192... 27 6.8
07_03_1149 - 24366416-24366470,24366586-24367751,24368375-24368725 27 6.8
11_01_0048 - 361999-362220,362321-362412,362499-362561,362606-36... 27 8.9
09_04_0204 - 15565684-15566223,15567272-15567678,15568143-155684... 27 8.9
07_01_0783 + 6068229-6068503,6069159-6069269,6069806-6070150,607... 27 8.9
03_02_0304 - 7273008-7273257,7273367-7273524,7273668-7273734,727... 27 8.9
03_02_0178 + 6195402-6199158,6199438-6200003 27 8.9
02_02_0372 + 9522751-9522964,9523043-9523255,9523471-9523555,952... 27 8.9
>12_01_0050 -
421227-421243,421508-421569,421574-421725,422310-423115,
424059-424359
Length = 445
Score = 27.9 bits (59), Expect = 5.1
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -3
Query: 139 GFRA-AINPVFLPAIFTCRPIEIYQCFVRHR 50
G +A A + V LP IF C I + Q VRHR
Sbjct: 348 GLKAKAHSQVILPMIFDCATILVLQTAVRHR 378
>03_05_0923 +
28848925-28849272,28849636-28849869,28849965-28850131,
28850433-28850651,28850743-28850929,28851012-28851063,
28851158-28851387,28851619-28851717,28851835-28852565,
28853004-28853519,28854140-28854398
Length = 1013
Score = 27.9 bits (59), Expect = 5.1
Identities = 15/48 (31%), Positives = 29/48 (60%)
Frame = +2
Query: 71 VNLYGPTREYRRQEDRVYSSPKTQTQSASINDQIEREIIIDSLFVKHL 214
V+L+ +E + Q DR++ PK SA+ +D++++ +DS+ K L
Sbjct: 778 VSLHARLQEMK-QSDRIHVLPKVFLLSAAESDKVKKIHAVDSVIPKPL 824
>10_01_0171 +
1917520-1918056,1919201-1919336,1921873-1922060,
1922491-1922694,1923913-1924425
Length = 525
Score = 27.5 bits (58), Expect = 6.8
Identities = 11/59 (18%), Positives = 30/59 (50%)
Frame = +2
Query: 95 EYRRQEDRVYSSPKTQTQSASINDQIEREIIIDSLFVKHLSPNNGQTKNIQRVTTVDPM 271
E + +E + S+P+ T+ ++ ++ ++ S H+S N+ + +V ++P+
Sbjct: 445 EKKDKEPNMQSTPEVGTEEMLVHGSTVKKKLVSSTIEDHVSCNSKNVNTVGKVHQMEPI 503
>07_03_1149 - 24366416-24366470,24366586-24367751,24368375-24368725
Length = 523
Score = 27.5 bits (58), Expect = 6.8
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = +1
Query: 265 PNGHDDGSNERRPPTLSMCTLRPLQH 342
P GH G RPP+L TL PL H
Sbjct: 50 PRGHSGGRKPARPPSL-QSTLWPLGH 74
>11_01_0048 -
361999-362220,362321-362412,362499-362561,362606-362717,
363285-364090,368545-368806
Length = 518
Score = 27.1 bits (57), Expect = 8.9
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -3
Query: 115 VFLPAIFTCRPIEIYQCFVRHR 50
V LP IF C I + Q VRHR
Sbjct: 344 VILPMIFDCATILVLQTAVRHR 365
>09_04_0204 - 15565684-15566223,15567272-15567678,15568143-15568446,
15568735-15570065,15570769-15570846,15570943-15571027
Length = 914
Score = 27.1 bits (57), Expect = 8.9
Identities = 18/78 (23%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
Frame = +2
Query: 2 LLVLFVMISITRSYKV--TMSDETLVNLYGPTREYRRQEDRVYSSPKTQTQSASINDQIE 175
LL+ +M +++ ++S + + YGP + E+RV S + Q ++ D E
Sbjct: 806 LLIALLMFLYKNKHRIRNSISRDQTRSRYGPEHINEQNEERVIDSSQVQNLQLTVPDDSE 865
Query: 176 REIIIDSLFVKHLSPNNG 229
+ LSP +G
Sbjct: 866 YTCQQEEEISIELSPASG 883
>07_01_0783 + 6068229-6068503,6069159-6069269,6069806-6070150,
6071030-6071211,6071331-6071422,6071505-6071835,
6071960-6072170,6072551-6072665,6073677-6073838,
6073938-6074610,6074766-6074972,6075134-6076254
Length = 1274
Score = 27.1 bits (57), Expect = 8.9
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +2
Query: 5 LVLFVMISITRSYKVTMSDETLVNLYGPTRE 97
L L +S+T +YK+ + E +NL GP E
Sbjct: 911 LPLAAFVSLTITYKLDKASERFLNLAGPALE 941
>03_02_0304 -
7273008-7273257,7273367-7273524,7273668-7273734,
7274461-7274645,7274801-7275215,7275311-7275418,
7275557-7275792,7275888-7275914
Length = 481
Score = 27.1 bits (57), Expect = 8.9
Identities = 11/31 (35%), Positives = 14/31 (45%)
Frame = +2
Query: 407 FDDDGCQENMKLCCRIPKPLTESQALKPNVT 499
FDDDGC + C + +P Q N T
Sbjct: 54 FDDDGCSPDADACRSVKRPRPRPQQRASNKT 84
>03_02_0178 + 6195402-6199158,6199438-6200003
Length = 1440
Score = 27.1 bits (57), Expect = 8.9
Identities = 10/36 (27%), Positives = 18/36 (50%)
Frame = +2
Query: 353 VIYENDPDITGTGRIDIRFDDDGCQENMKLCCRIPK 460
V + + D GR+D+ GC +N + C +P+
Sbjct: 763 VSVKQEDDTPKIGRLDLSLSLSGCLQNPEFKCSVPR 798
>02_02_0372 +
9522751-9522964,9523043-9523255,9523471-9523555,
9524373-9524448,9524974-9525150,9525473-9525566,
9526357-9526466,9526568-9526657,9526752-9526832,
9528468-9529277,9530777-9530896
Length = 689
Score = 27.1 bits (57), Expect = 8.9
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = +2
Query: 266 PMVTTTAATNGDRRHCQCVPYDHCNINYV 352
P V AT G R+ VP DHC N+V
Sbjct: 653 PGVAEAIATFGTRQVEMKVPLDHCESNFV 681
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,362,715
Number of Sequences: 37544
Number of extensions: 240406
Number of successful extensions: 498
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 498
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -