Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_F10
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50208| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.0  
SB_15074| Best HMM Match : PID (HMM E-Value=0.00012)                   28   5.3  

>SB_50208| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1705

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +2

Query: 95   EYRRQEDRVYSSPKTQTQSASINDQIEREIIIDSLFV 205
            E RR +D    +PK +T+  S  D+ E E  ++ LFV
Sbjct: 1086 EIRRFKDETKETPKKKTKRRSSRDKDEEEEDVEYLFV 1122


>SB_15074| Best HMM Match : PID (HMM E-Value=0.00012)
          Length = 1153

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 26/99 (26%), Positives = 44/99 (44%)
 Frame = +2

Query: 86  PTREYRRQEDRVYSSPKTQTQSASINDQIEREIIIDSLFVKHLSPNNGQTKNIQRVTTVD 265
           PTRE      R   +  T+T  ++I    E + I ++L   + + N G++K+ ++  T  
Sbjct: 364 PTRESENPILRQDFAQLTETYGSTIP---ELKTIRETLAWINKNQNRGKSKSTRKKKTSS 420

Query: 266 PMVTTTAATNGDRRHCQCVPYDHCNINYVVIYENDPDIT 382
           P +   + + GD R        H       +YEN P IT
Sbjct: 421 PFIFKRSLSTGDARCSANSSPAHS------VYENSPVIT 453


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,839,788
Number of Sequences: 59808
Number of extensions: 303070
Number of successful extensions: 739
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 737
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)