Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_F10
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g25000.1 68417.m03587 alpha-amylase, putative / 1,4-alpha-D-g...    30   0.80 
At4g09150.1 68417.m01515 T-complex protein 11 contains Pfam PF05...    29   1.9  
At4g17130.1 68417.m02579 hypothetical protein                          28   3.2  
At3g23590.1 68416.m02967 expressed protein                             28   4.3  
At1g14420.1 68414.m01710 pectate lyase family protein similar to...    28   4.3  
At3g61630.1 68416.m06907 AP2 domain-containing transcription fac...    27   5.7  
At5g65120.1 68418.m08192 expressed protein                             27   7.5  
At2g38240.1 68415.m04696 oxidoreductase, 2OG-Fe(II) oxygenase fa...    27   7.5  
At2g20595.1 68415.m02409 expressed protein                             27   7.5  
At2g43210.2 68415.m05371 UBX domain-containing protein contains ...    27   9.9  
At2g43210.1 68415.m05370 UBX domain-containing protein contains ...    27   9.9  
At1g15570.1 68414.m01872 cyclin, putative similar to cyclin A2 [...    27   9.9  

>At4g25000.1 68417.m03587 alpha-amylase, putative /
           1,4-alpha-D-glucan glucanohydrolase, putative similar to
           alpha-amylase from Vigna mungo SP|P17859, Ipomoea nil
           GI:21670851; contains Pfam profile PF00128: Alpha
           amylase, catalytic domain
          Length = 423

 Score = 30.3 bits (65), Expect = 0.80
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +2

Query: 356 IYENDPDITGTGRIDIRFDDDGCQENMKLCCRIPKPLTE 472
           +  NDP   GTG +D   D DG  +   L  R+ K L+E
Sbjct: 148 VCRNDPKFPGTGNLDTGGDFDGAPDIDHLNPRVQKELSE 186


>At4g09150.1 68417.m01515 T-complex protein 11 contains Pfam
           PF05794: T-complex protein 11
          Length = 1097

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = +2

Query: 152 ASINDQIEREIIID--SLFVKHLSPNNGQTKNIQ 247
           AS N+ I  EI+ D  S F   L PN G T N+Q
Sbjct: 603 ASENEVIVNEIVHDNSSSFADSLDPNTGDTSNLQ 636


>At4g17130.1 68417.m02579 hypothetical protein
          Length = 747

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = +2

Query: 17  VMISITRSYKVTMSDETLVNLY--GPTREYRRQEDRVYSSPKTQTQSAS 157
           + +    SY V+  D   + +Y   P ++  R+ED V  SP T T+ ++
Sbjct: 348 ISLGACSSYSVSREDGVELEVYHKAPQQDSERKEDPVSQSPSTTTERST 396


>At3g23590.1 68416.m02967 expressed protein 
          Length = 1309

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 5    LVLFVMISITRSYKVTMSDETLVNLYGPTRE 97
            L L   +S+T +YK+  + E  +NL GP  E
Sbjct: 946  LPLAAFVSLTITYKIDKASERFLNLAGPALE 976


>At1g14420.1 68414.m01710 pectate lyase family protein similar to
           pectate lyase P59 SP:P15722 from [Lycopersicon
           esculentum]
          Length = 459

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 146 QSASINDQIEREIIIDSLFVKHLSPNNG 229
           + A +  Q    +II +++VKH+ P NG
Sbjct: 207 EGAGLTLQFVNNVIIHNIYVKHIVPGNG 234


>At3g61630.1 68416.m06907 AP2 domain-containing transcription
           factor, putative transcription factor Pti6 -
           Lycopersicon esculentum, PIR:T07728
          Length = 315

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +2

Query: 215 SPNNGQTKNIQRVTTVDPMVTTTAATNGDRRHCQCVP 325
           +P+NG  + + R+T  DP  T +++ + D  +   VP
Sbjct: 22  TPSNGSPRLV-RITVTDPFATDSSSDDDDNNNVTVVP 57


>At5g65120.1 68418.m08192 expressed protein
          Length = 317

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -1

Query: 516 PQPFELVTFGFRACDSVNGFGILQHN 439
           P P  + +F    C +V+G GI+ H+
Sbjct: 166 PNPQAIKSFNMNRCSNVDGMGIVNHH 191


>At2g38240.1 68415.m04696 oxidoreductase, 2OG-Fe(II) oxygenase
           family protein similar to flavonol synthase [Citrus
           unshiu][gi:4126403], leucoanthocyanidin dioxygenase
           [Daucus carota][gi:5924383]; contains PF03171 2OG-Fe(II)
           oxygenase superfamily domain
          Length = 353

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +2

Query: 425 QENMKLCCRIPKPLTESQALKPN 493
           +E  KLC R+ + L+ES  LKPN
Sbjct: 168 EEVRKLCERLTETLSESLGLKPN 190


>At2g20595.1 68415.m02409 expressed protein
          Length = 69

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +2

Query: 404 RFDDDGCQENMKLCCRIPKP 463
           R DD  C EN K+ C  PKP
Sbjct: 40  RSDDGSCYENCKIECGGPKP 59


>At2g43210.2 68415.m05371 UBX domain-containing protein contains
           Pfam profile PF00789: UBX domain
          Length = 531

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 16/65 (24%), Positives = 28/65 (43%)
 Frame = +2

Query: 197 LFVKHLSPNNGQTKNIQRVTTVDPMVTTTAATNGDRRHCQCVPYDHCNINYVVIYENDPD 376
           LFV ++S  + ++  + R+T  D  V  + +      H Q    D  N + +  Y + P 
Sbjct: 26  LFVVYISGEDEESDKLNRLTWTDASVADSLSKYCILVHIQAGSVDATNFSAIYPYSSVPC 85

Query: 377 ITGTG 391
           I   G
Sbjct: 86  IAAIG 90


>At2g43210.1 68415.m05370 UBX domain-containing protein contains
           Pfam profile PF00789: UBX domain
          Length = 531

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 16/65 (24%), Positives = 28/65 (43%)
 Frame = +2

Query: 197 LFVKHLSPNNGQTKNIQRVTTVDPMVTTTAATNGDRRHCQCVPYDHCNINYVVIYENDPD 376
           LFV ++S  + ++  + R+T  D  V  + +      H Q    D  N + +  Y + P 
Sbjct: 26  LFVVYISGEDEESDKLNRLTWTDASVADSLSKYCILVHIQAGSVDATNFSAIYPYSSVPC 85

Query: 377 ITGTG 391
           I   G
Sbjct: 86  IAAIG 90


>At1g15570.1 68414.m01872 cyclin, putative similar to cyclin A2
           [Lycopersicon esculentum] GI:5420276, cyclin [Medicago
           sativa] GI:1050559; contains Pfam profiles PF00134:
           Cyclin, N-terminal domain, PF02984: Cyclin, C-terminal
           domain
          Length = 450

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +2

Query: 233 TKNIQRVTTVDPMVTTTAATNGDRRHCQCVPYDHCNIN 346
           T+N QRV T  P +  T AT  ++R  + V  +  N+N
Sbjct: 28  TQNQQRVNTKRPALEDTRATGPNKRKKRAVLGEITNVN 65


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,103,650
Number of Sequences: 28952
Number of extensions: 199937
Number of successful extensions: 476
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 476
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)