Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_F09
         (506 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein L21|Sch...    31   0.075
SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein L21|Sc...    29   0.40 
SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p...    28   0.92 
SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subun...    26   2.8  
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    25   4.9  
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    25   6.5  

>SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein
           L21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 160

 Score = 31.5 bits (68), Expect = 0.075
 Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
 Frame = +2

Query: 50  FLDSRRVSSKERKEAEVRGEFMRIRR---PPDTTHVSPMISNATGTQARPLPLDLT 208
           FLD  + +  +RKEA+ +G+ +++RR   PP T H     +N   T   P+  D T
Sbjct: 105 FLDRVKANEAKRKEAKAQGKTVQLRRQPAPPATAHFVSTENNEPVT-LHPVAYDTT 159


>SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein
           L21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 160

 Score = 29.1 bits (62), Expect = 0.40
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
 Frame = +2

Query: 50  FLDSRRVSSKERKEAEVRGEFMRIRR---PPDTTHVSPMISNATGTQARPLPLDLT 208
           FLD  + +  +RKEA+ +G+ +++RR   PP   H     +N   T   P+  D T
Sbjct: 105 FLDRVKANEAKRKEAKAQGKTVQLRRQPAPPAKAHFVSTENNEPVT-LHPVAYDTT 159


>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 749

 Score = 27.9 bits (59), Expect = 0.92
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +2

Query: 131 PDTTHVSPMISNATGTQARPLPLDLTSLGKHKGAL 235
           P+ T++S ++SN T   A+P   + T L  H+  L
Sbjct: 447 PNLTNISRVLSNKTSKSAKPKRSERTGLLSHQSTL 481


>SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subunit
           Rpc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1165

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 6/57 (10%)
 Frame = +2

Query: 164 NATGTQARPLP-LDLTSLGKHK--GALY---YKSRKLRMRLPAILVSWHSVPLVLKI 316
           N  G   +  P ++   +GK +  GAL+   YK +KL   +P I   W  +P  LK+
Sbjct: 4   NTAGDPQKSQPKINKGGIGKDESFGALFKPVYKGKKLADPVPTIEDKWQLLPAFLKV 60


>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 513

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 16/54 (29%), Positives = 24/54 (44%)
 Frame = -2

Query: 208 CQVEGQRPRLCSRCV*NHRGYVSSIRRATNPHEFPSYLSFLTFFRRNSTRIQEP 47
           C  E QRP  C RC   +  +V  +   T P + P   +F+     N+T   +P
Sbjct: 13  CSNEFQRPGNCPRC---NSDFVEMVEPNTAPEDDPRAANFV-----NATEFNDP 58


>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1096

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
 Frame = +2

Query: 107 EFMRIRRPPDTTHVSPMISNATGTQARPLPLDLTSLGKHKGALYYKSRKLRMRLPAILVS 286
           EF+ I  P  T+ +  + S       +     L S GK +   Y++ +KLR  L  + + 
Sbjct: 87  EFVAISDPSGTSSIEKVSSICLKNDIQTSSFVLPS-GKTR---YFEYKKLRFYLEPLNLQ 142

Query: 287 WHSVPL-VLKISFVSST 334
           W  +PL     S V+ST
Sbjct: 143 WVLMPLETSAYSLVTST 159


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,120,717
Number of Sequences: 5004
Number of extensions: 41922
Number of successful extensions: 112
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)