Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_F09
(506 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0290 + 2246791-2247027,2248089-2248346 29 1.6
05_04_0120 - 18175292-18176206,18177315-18177785,18178562-18179635 29 2.1
10_08_0310 - 16669565-16669822,16670558-16670794 29 2.8
07_03_0410 - 17827970-17828039,17828132-17828304,17828385-178284... 29 2.8
05_01_0038 + 260080-260380,260852-261022,261764-261810,262266-26... 28 3.7
12_01_0818 + 7524549-7524747,7524855-7525863,7525964-7526108,752... 27 6.5
09_02_0203 - 5746068-5746307,5746469-5746729,5746833-5748239,574... 27 6.5
06_01_0007 + 130582-131544,132187-132264,132615-132732,133228-13... 27 6.5
05_07_0364 - 29611149-29611211,29611441-29611623,29611796-296118... 27 6.5
03_06_0774 + 36171177-36173099 27 6.5
03_05_0530 - 25306788-25306919,25307446-25308037,25308152-253089... 27 6.5
06_03_1275 + 28903961-28904123,28904225-28904322,28904406-289045... 27 8.7
>03_01_0290 + 2246791-2247027,2248089-2248346
Length = 164
Score = 29.5 bits (63), Expect = 1.6
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +2
Query: 62 RRVSSKERK-EAEVRGEFMRIRRPPDTTHVSPMISNATGTQARPLPLDLTS 211
R++ + + K +A+ RGE + +R P+ M+ AT P+P D+ +
Sbjct: 108 RKIKNDQLKADAKARGEVISTKRQPEGPKPGFMVEGATLETVTPIPYDVVN 158
>05_04_0120 - 18175292-18176206,18177315-18177785,18178562-18179635
Length = 819
Score = 29.1 bits (62), Expect = 2.1
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Frame = +3
Query: 372 LVEIRSPKLTLTGLPNHPHLI--NLFRKSSIIHRPRVH 479
L+ +RS +L+ LP+H HL+ +L SS + PR H
Sbjct: 107 LLSLRSASASLSSLPSHLHLLSSHLSLLSSHLSAPRAH 144
>10_08_0310 - 16669565-16669822,16670558-16670794
Length = 164
Score = 28.7 bits (61), Expect = 2.8
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +2
Query: 62 RRVSSKERK-EAEVRGEFMRIRRPPDTTHVSPMISNATGTQARPLPLDLTS 211
R++ + + K +A+ RGE + +R P M+ AT P+P D+ +
Sbjct: 108 RKIKNDQLKADAKARGEVISTKRQPQGPKPGFMVEGATLETVTPIPYDVVN 158
>07_03_0410 -
17827970-17828039,17828132-17828304,17828385-17828437,
17828554-17828676,17829337-17829408,17829902-17829976,
17830065-17830169,17831891-17832042,17833326-17833420,
17833813-17833892,17833984-17834071
Length = 361
Score = 28.7 bits (61), Expect = 2.8
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = +2
Query: 281 VSWHSVPLVLKISFVSSTFIHTRRLRVHVLSGRDTFA 391
V+W VP + +SF+SS F+ LRV L DT+A
Sbjct: 100 VAWMIVPFGILVSFISSLFV----LRVKKLRLSDTYA 132
>05_01_0038 +
260080-260380,260852-261022,261764-261810,262266-262412,
262495-262569,262826-262935,263032-263159,263368-263429,
263599-263748,263827-263861,264083-264151,264538-264629,
264718-264794,265434-265532
Length = 520
Score = 28.3 bits (60), Expect = 3.7
Identities = 10/30 (33%), Positives = 20/30 (66%)
Frame = +2
Query: 14 RYFMIYEMPNLRFLDSRRVSSKERKEAEVR 103
R+ +I + ++ L+ +S +ER+EAE+R
Sbjct: 380 RFVLIARLGKVKILNGSEISPRERREAEIR 409
>12_01_0818 +
7524549-7524747,7524855-7525863,7525964-7526108,
7526206-7526295,7526404-7526553,7527333-7528094,
7528177-7528496,7528581-7528707,7528792-7528959,
7529054-7530466,7530563-7530823,7530983-7531144,
7531976-7532121,7532601-7532667,7533483-7533587
Length = 1707
Score = 27.5 bits (58), Expect = 6.5
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +2
Query: 128 PPDTTHVSPMISNATGTQ-ARPLPLDLTSLGKHKGALYYKSRKLR 259
PP+ S N T T + LPLD+T GK +G ++ +R LR
Sbjct: 795 PPEAHMYSYTHHNGTLTVLVKSLPLDVTLSGKDQGRIWMWTRCLR 839
>09_02_0203 -
5746068-5746307,5746469-5746729,5746833-5748239,
5748588-5748714,5748800-5749119,5749202-5749963,
5750749-5750898,5751007-5751096,5751196-5751340,
5751440-5751617,5751753-5752448,5752555-5752753
Length = 1524
Score = 27.5 bits (58), Expect = 6.5
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +2
Query: 128 PPDTTHVSPMISNATGTQ-ARPLPLDLTSLGKHKGALYYKSRKLR 259
PP+ S N T T + LPLD+T GK +G ++ +R LR
Sbjct: 750 PPEAHMYSYTHHNGTLTVLVKSLPLDVTLSGKDQGRIWMWTRCLR 794
>06_01_0007 +
130582-131544,132187-132264,132615-132732,133228-133271,
133389-133448,133536-133588,133671-133837,133963-134167,
134989-135046,135225-135281,135363-135608,135938-136002,
136090-136158,136238-136331,136467-136607,137159-137304,
137452-138110,138222-138335,138406-138560
Length = 1163
Score = 27.5 bits (58), Expect = 6.5
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = +2
Query: 119 IRRPPDTTHVSPMISNATGTQARPLPLDL 205
+ RPP H P NA A LP++L
Sbjct: 54 VARPPQPPHAQPTELNAVAAAASALPMEL 82
>05_07_0364 -
29611149-29611211,29611441-29611623,29611796-29611853,
29612150-29612207,29612504-29612561,29612859-29612916,
29613214-29613271,29613568-29613625,29613923-29613980,
29614277-29614334,29614631-29614688,29614983-29615040,
29615337-29615394,29615691-29615748,29616045-29616102,
29616400-29616457,29616755-29616812,29617109-29617166,
29617463-29617520,29617817-29617874,29618171-29618228,
29618525-29618582,29618878-29618935,29619233-29619290,
29619942-29619999,29620297-29620376,29620649-29620706,
29621001-29621058,29621353-29621410,29621707-29621764,
29622415-29622472,29622767-29622824,29623121-29623164,
29623475-29623532,29623829-29623886,29624537-29624594,
29624889-29624946,29625243-29625300,29625597-29625654,
29626305-29626400,29626697-29626792,29627797-29627892,
29628188-29628283,29629996-29630053,29630350-29630407,
29630704-29630799,29631096-29631191,29632196-29632253,
29632549-29632644,29633648-29633743,29634040-29634042
Length = 1114
Score = 27.5 bits (58), Expect = 6.5
Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 7/42 (16%)
Frame = +1
Query: 151 PYDFKRNGNTSAASAP-----RLDIIGQTQRCFIL*V--PQI 255
PYD +R T+AAS P R Q RCF+ V PQI
Sbjct: 357 PYDIRRFAETTAASWPMLWTLRYSTFRQNNRCFVAYVVDPQI 398
Score = 27.5 bits (58), Expect = 6.5
Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 7/42 (16%)
Frame = +1
Query: 151 PYDFKRNGNTSAASAP-----RLDIIGQTQRCFIL*V--PQI 255
PYD +R T+AAS P R Q RCF+ V PQI
Sbjct: 449 PYDIRRFAETTAASWPMLGTLRYSTFRQNNRCFVAYVVDPQI 490
>03_06_0774 + 36171177-36173099
Length = 640
Score = 27.5 bits (58), Expect = 6.5
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = +2
Query: 257 RMRLPAILVSWHSVPLVLKISFVSSTFIHTRRLRVHVL 370
+MRL +L + +V +LK S S F+H R++ ++L
Sbjct: 345 QMRLSGVLPNSFTVSTLLKGSSSSLAFLHARKIHGYIL 382
>03_05_0530 -
25306788-25306919,25307446-25308037,25308152-25308975,
25309533-25309592,25310115-25310180,25310318-25310461,
25310616-25310756,25310898-25311056,25311818-25311884,
25311986-25312158,25312237-25312333,25312410-25312528,
25312867-25312951,25313120-25313321,25314456-25314633
Length = 1012
Score = 27.5 bits (58), Expect = 6.5
Identities = 13/48 (27%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Frame = -3
Query: 141 VVSGGRRIRMNSPLTSASL--RSFDETRRESKNRRLGISYIMKYLKML 4
+ S +M + + SA+L R DE+R + +RRLG+ +++ + ++
Sbjct: 458 LASSAGSTKMMAGILSANLEWRGMDESRHMAADRRLGVHFLVDHCNVI 505
>06_03_1275 +
28903961-28904123,28904225-28904322,28904406-28904550,
28904690-28904814,28904957-28905049,28905297-28905362,
28905459-28905524,28905790-28905870,28905947-28906123,
28906212-28906287,28906394-28906521,28906639-28906950
Length = 509
Score = 27.1 bits (57), Expect = 8.7
Identities = 17/43 (39%), Positives = 24/43 (55%)
Frame = +2
Query: 65 RVSSKERKEAEVRGEFMRIRRPPDTTHVSPMISNATGTQARPL 193
R SK+ A V+ + RPP H+S +I+ A+G ARPL
Sbjct: 27 RAHSKDLDVAVVKAT-NHVERPPKERHLSKIIAAASG--ARPL 66
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,878,553
Number of Sequences: 37544
Number of extensions: 284514
Number of successful extensions: 739
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 738
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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