Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_F09
(506 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_29143| Best HMM Match : No HMM Matches (HMM E-Value=.) 61 6e-10
SB_50945| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.72
SB_47407| Best HMM Match : RnaseH (HMM E-Value=5.9) 31 0.72
SB_22266| Best HMM Match : Dimerisation (HMM E-Value=4.3) 31 0.72
SB_22156| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.72
SB_56354| Best HMM Match : RVT_1 (HMM E-Value=3.4e-19) 31 0.72
SB_49147| Best HMM Match : RVT_1 (HMM E-Value=3.4e-19) 31 0.72
SB_44486| Best HMM Match : Dimerisation (HMM E-Value=6.2) 31 0.72
SB_31504| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.72
SB_17252| Best HMM Match : Integrase_Zn (HMM E-Value=0.96) 31 0.72
SB_10363| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.72
SB_47442| Best HMM Match : Linker_histone (HMM E-Value=1.4e-36) 30 0.95
SB_40370| Best HMM Match : rve (HMM E-Value=1.3e-37) 30 1.3
SB_29850| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_40415| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.1
SB_5464| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.7
SB_6111| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.9
>SB_29143| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 123
Score = 60.9 bits (141), Expect = 6e-10
Identities = 31/75 (41%), Positives = 46/75 (61%), Gaps = 2/75 (2%)
Frame = +2
Query: 11 FRYFMIYEMPNLRFLDSRRVSSKERKEAEVRGEFMRIRRPPDTT--HVSPMISNATGTQA 184
+RY++++++P L+FLDSR V +ER+EA G FM+I P T SP S+ G +
Sbjct: 24 YRYYILHKLPKLKFLDSRTVKEQERQEAMRVGAFMKIVTPSTATVKTGSPTDSDFDGFKY 83
Query: 185 RPLPLDLTSLGKHKG 229
PLP + S G+H G
Sbjct: 84 TPLPTETASSGEHHG 98
>SB_50945| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 896
Score = 30.7 bits (66), Expect = 0.72
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Frame = -1
Query: 317 ISLILMVLSAKRPKWRAGAFAICGTYSIKHLCVC-PMMS--SRGAEAALV 177
IS L L++K KW+ GA IKHL C P+MS ++GA+ ++
Sbjct: 176 ISAPLWDLTSKNAKWKWGAKEAESFAQIKHLLTCAPVMSYFTQGAQTRII 225
>SB_47407| Best HMM Match : RnaseH (HMM E-Value=5.9)
Length = 271
Score = 30.7 bits (66), Expect = 0.72
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Frame = -1
Query: 317 ISLILMVLSAKRPKWRAGAFAICGTYSIKHLCVC-PMMS--SRGAEAALV 177
IS L L++K KW+ GA IKHL C P+MS ++GA+ ++
Sbjct: 55 ISAPLWDLTSKNAKWKWGAKEAESFAQIKHLLTCAPVMSYFTQGAQTRII 104
>SB_22266| Best HMM Match : Dimerisation (HMM E-Value=4.3)
Length = 290
Score = 30.7 bits (66), Expect = 0.72
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Frame = -1
Query: 317 ISLILMVLSAKRPKWRAGAFAICGTYSIKHLCVC-PMMS--SRGAEAALV 177
IS L L++K KW+ GA IKHL C P+MS ++GA+ ++
Sbjct: 107 ISAPLWDLTSKNAKWKWGAKEAESFAQIKHLLTCAPVMSYFTQGAQTRII 156
>SB_22156| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1551
Score = 30.7 bits (66), Expect = 0.72
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Frame = -1
Query: 317 ISLILMVLSAKRPKWRAGAFAICGTYSIKHLCVC-PMMS--SRGAEAALV 177
IS L L++K KW+ GA IKHL C P+MS ++GA+ ++
Sbjct: 937 ISAPLWDLTSKNAKWKWGAKEAESFAQIKHLLTCAPVMSYFTQGAQTRII 986
>SB_56354| Best HMM Match : RVT_1 (HMM E-Value=3.4e-19)
Length = 340
Score = 30.7 bits (66), Expect = 0.72
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Frame = -1
Query: 317 ISLILMVLSAKRPKWRAGAFAICGTYSIKHLCVC-PMMS--SRGAEAALV 177
IS L L++K KW+ GA IKHL C P+MS ++GA+ ++
Sbjct: 238 ISAPLWDLTSKNAKWKWGAKEAESFAQIKHLLTCAPVMSYFTQGAQTRII 287
>SB_49147| Best HMM Match : RVT_1 (HMM E-Value=3.4e-19)
Length = 667
Score = 30.7 bits (66), Expect = 0.72
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Frame = -1
Query: 317 ISLILMVLSAKRPKWRAGAFAICGTYSIKHLCVC-PMMS--SRGAEAALV 177
IS L L++K KW+ GA IKHL C P+MS ++GA+ ++
Sbjct: 438 ISAPLWDLTSKNAKWKWGAKEAESFAQIKHLLTCAPVMSYFTQGAQTRII 487
>SB_44486| Best HMM Match : Dimerisation (HMM E-Value=6.2)
Length = 269
Score = 30.7 bits (66), Expect = 0.72
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Frame = -1
Query: 317 ISLILMVLSAKRPKWRAGAFAICGTYSIKHLCVC-PMMS--SRGAEAALV 177
IS L L++K KW+ GA IKHL C P+MS ++GA+ ++
Sbjct: 4 ISAPLWDLTSKNAKWKWGAKEAESFAQIKHLLTCAPVMSYFTQGAQTRII 53
>SB_31504| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 767
Score = 30.7 bits (66), Expect = 0.72
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Frame = -1
Query: 317 ISLILMVLSAKRPKWRAGAFAICGTYSIKHLCVC-PMMS--SRGAEAALV 177
IS L L++K KW+ GA IKHL C P+MS ++GA+ ++
Sbjct: 121 ISAPLWDLTSKNAKWKWGAKEAESFAQIKHLLTCAPVMSYFTQGAQTRII 170
>SB_17252| Best HMM Match : Integrase_Zn (HMM E-Value=0.96)
Length = 391
Score = 30.7 bits (66), Expect = 0.72
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Frame = -1
Query: 317 ISLILMVLSAKRPKWRAGAFAICGTYSIKHLCVC-PMMS--SRGAEAALV 177
IS L L++K KW+ GA IKHL C P+MS ++GA+ ++
Sbjct: 38 ISAPLWDLTSKNAKWKWGAKEAESFAQIKHLLTCAPVMSYFTQGAQTRII 87
>SB_10363| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 975
Score = 30.7 bits (66), Expect = 0.72
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Frame = -1
Query: 317 ISLILMVLSAKRPKWRAGAFAICGTYSIKHLCVC-PMMS--SRGAEAALV 177
IS L L++K KW+ GA IKHL C P+MS ++GA+ ++
Sbjct: 253 ISAPLWDLTSKNAKWKWGAKEAESFAQIKHLLTCAPVMSYFTQGAQTRII 302
>SB_47442| Best HMM Match : Linker_histone (HMM E-Value=1.4e-36)
Length = 650
Score = 30.3 bits (65), Expect = 0.95
Identities = 16/58 (27%), Positives = 29/58 (50%)
Frame = +1
Query: 187 ASAPRLDIIGQTQRCFIL*VPQIANAPARHFGLLALSTISIKDIFRFFYFHTYSSVKG 360
+S L+ + +RC IL I + F + + + ++FR F FH ++S+KG
Sbjct: 35 SSRSALNAMAYKKRCIILVTFSIGFLYSITFHAFFIPSFKVINLFRRFQFHQFASLKG 92
>SB_40370| Best HMM Match : rve (HMM E-Value=1.3e-37)
Length = 1393
Score = 29.9 bits (64), Expect = 1.3
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Frame = -1
Query: 317 ISLILMVLSAKRPKWRAGAFAICGTYSIKHLCVC-PMMS--SRGAEAALV 177
IS L L++K KW+ GA IKHL C P+MS ++GA+ ++
Sbjct: 747 ISAPLWDLTSKNAKWKWGAKEAESFAQIKHLPTCAPVMSYFTQGAQTRII 796
>SB_29850| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 219
Score = 29.1 bits (62), Expect = 2.2
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Frame = -1
Query: 317 ISLILMVLSAKRPKWRAGAFAICGTYSIKHLCVC-PMMS--SRGAEAALV 177
IS L ++K KW+ GA IKHL C P+MS ++GA+ ++
Sbjct: 121 ISAPLWDFTSKNAKWKWGAKEAESFAQIKHLLTCAPVMSYFTQGAQTRII 170
>SB_40415| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1512
Score = 27.9 bits (59), Expect = 5.1
Identities = 15/62 (24%), Positives = 29/62 (46%)
Frame = +2
Query: 29 YEMPNLRFLDSRRVSSKERKEAEVRGEFMRIRRPPDTTHVSPMISNATGTQARPLPLDLT 208
YE P +R + ++ V + R+ + + P V+P++ N +R P+DL
Sbjct: 1353 YEEPGVREMVNQLVEEETRRYRPTKNYLDFLPTPNYDVFVTPVLKNEFDRISRKQPMDLL 1412
Query: 209 SL 214
S+
Sbjct: 1413 SM 1414
>SB_5464| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 223
Score = 27.5 bits (58), Expect = 6.7
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = -2
Query: 199 EGQRPRLCSRCV*NHRGYVSSIRRATN 119
+G+ RLC +C +RG+++S+ + TN
Sbjct: 174 KGRLTRLCRQCDARYRGHLASVVKLTN 200
>SB_6111| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 366
Score = 27.1 bits (57), Expect = 8.9
Identities = 15/48 (31%), Positives = 28/48 (58%)
Frame = +1
Query: 355 KGTCSLWSRYVRLS*PLPVCLITLTL*ICFVNLLSFIXPVCTNPLIIP 498
+ T ++ ++ +RLS + VCLIT+ + ++ L SF NP ++P
Sbjct: 203 RNTQAVMAQELRLS--ITVCLITVLFVLSWLPLFSFSMVATYNPRMLP 248
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,987,654
Number of Sequences: 59808
Number of extensions: 320631
Number of successful extensions: 854
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 853
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1111677931
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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