Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_F08
(545 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_38975| Best HMM Match : Serpin (HMM E-Value=0) 58 6e-09
SB_55238| Best HMM Match : Serpin (HMM E-Value=0) 55 4e-08
SB_55237| Best HMM Match : Serpin (HMM E-Value=0) 51 7e-07
SB_34605| Best HMM Match : APG6 (HMM E-Value=0.94) 32 0.35
SB_18241| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.1
SB_22514| Best HMM Match : Drf_FH1 (HMM E-Value=1.8) 29 2.5
SB_27357| Best HMM Match : MFMR (HMM E-Value=3.2) 28 4.3
SB_1509| Best HMM Match : SRR (HMM E-Value=0.22) 28 4.3
SB_51901| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.6
SB_49251| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.6
SB_2329| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.6
SB_44086| Best HMM Match : BTB (HMM E-Value=1.8e-23) 27 7.6
>SB_38975| Best HMM Match : Serpin (HMM E-Value=0)
Length = 380
Score = 57.6 bits (133), Expect = 6e-09
Identities = 35/162 (21%), Positives = 77/162 (47%), Gaps = 3/162 (1%)
Frame = +1
Query: 67 NVVSSPLGVMMLMLLYKAGAGEGSRAEIDK-FLGNGDYSGVANPYISLSKTFSEMNPDYF 243
N+ SP +++ + + GA + ++ K F D + ++ S + +
Sbjct: 29 NLFYSPASIVVALAMTYLGARGNTATQMTKTFHFPTDVPEKFHDFLQALNA-SNSDGNQI 87
Query: 244 TMANKIYVGNKYTLDEKFTITVRQ-YQSEVETIDF-SDTKKAADIINQWANEKTRGHIKS 417
MAN+++ + + E+F ++ + +E+ +D+ ++ A D +N+W +KT+ IK+
Sbjct: 88 LMANRLFAQMGFEILEEFKKASKESFSAEMALVDYVKNSNGARDTVNRWVEQKTKDKIKN 147
Query: 418 PISDDTIDPNAAAALFNVIFFQGHWHVPFNASETKEKDFMLT 543
I + + + L N ++F+G W FN + T+ F T
Sbjct: 148 LIPEGMFNKDTILCLVNAVYFKGSWMKHFNRNATQSGKFKTT 189
>SB_55238| Best HMM Match : Serpin (HMM E-Value=0)
Length = 345
Score = 54.8 bits (126), Expect = 4e-08
Identities = 26/102 (25%), Positives = 53/102 (51%), Gaps = 2/102 (1%)
Frame = +1
Query: 244 TMANKIYVGNKYTLDEKFT-ITVRQYQSEVETIDF-SDTKKAADIINQWANEKTRGHIKS 417
++AN +++ +++ ++FT I + Y +++ +D+ +D + A +NQW E+T+ I
Sbjct: 51 SIANNLFLQKDFSILKEFTDICQKYYDADISLVDYKTDFEGARKHVNQWVEERTKKKICD 110
Query: 418 PISDDTIDPNAAAALFNVIFFQGHWHVPFNASETKEKDFMLT 543
I+ + L N I+F+G W PF + +F T
Sbjct: 111 LIAPGVFNMLTRLTLVNAIYFKGMWDKPFKKEHSHSSEFRTT 152
>SB_55237| Best HMM Match : Serpin (HMM E-Value=0)
Length = 363
Score = 50.8 bits (116), Expect = 7e-07
Identities = 28/109 (25%), Positives = 53/109 (48%), Gaps = 2/109 (1%)
Frame = +1
Query: 220 SEMNPDYFTMANKIYVGNKYTLDEKFTITVRQ-YQSEVETIDFSDTK-KAADIINQWANE 393
S++ + NKI+ +++ + E+F R+ Y SE+ +DF + A +N W ++
Sbjct: 48 SDLGYGEIQLVNKIWGHDEFEILEEFLHGTREFYHSEMAQVDFVNKAFDARKEVNAWVHQ 107
Query: 394 KTRGHIKSPISDDTIDPNAAAALFNVIFFQGHWHVPFNASETKEKDFML 540
+T+G+IK I I+ + N ++F+G W F T F +
Sbjct: 108 QTKGNIKELIPHGVINSLTRLIIVNAVYFKGVWKKEFGEENTFHAAFFV 156
>SB_34605| Best HMM Match : APG6 (HMM E-Value=0.94)
Length = 1047
Score = 31.9 bits (69), Expect = 0.35
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = +1
Query: 229 NPDYFTMANKIYVGNKYTLDEKFTITVRQYQSEV-ETIDFSDTKKAADIINQWANEKTRG 405
+PD + +K T D + + + +SEV E DFS K D + + +EK R
Sbjct: 102 DPDVMERILTERIHDKLTSDSELEPLLNELKSEVAEDYDFSVRKAIVDYVLKDPSEKNRL 161
Query: 406 HIKS 417
HIKS
Sbjct: 162 HIKS 165
>SB_18241| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 65
Score = 30.3 bits (65), Expect = 1.1
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = -3
Query: 456 GSCIRIYGVIRDWRF-NMSSGLLISPLINDVS 364
GSC+ GV R W+F +++ G L+S L N V+
Sbjct: 3 GSCLWKLGVFRAWKFGSVNDGFLLSGLSNQVA 34
>SB_22514| Best HMM Match : Drf_FH1 (HMM E-Value=1.8)
Length = 336
Score = 29.1 bits (62), Expect = 2.5
Identities = 16/45 (35%), Positives = 26/45 (57%)
Frame = -1
Query: 170 PLPKNLSISARLPSPAPALYRSISIITPNGEDTTFLSFDDVYVSL 36
PLP + + + PS +PA Y S + +T G +TF D+ ++SL
Sbjct: 235 PLPTSATPTGTTPSVSPATYSSPTPVTIQG--STFTFDDNAFLSL 277
>SB_27357| Best HMM Match : MFMR (HMM E-Value=3.2)
Length = 468
Score = 28.3 bits (60), Expect = 4.3
Identities = 14/51 (27%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Frame = +1
Query: 172 DYSGVANPYISLSKTFSEMNPDYFTMA-NKIYVGNKY-TLDEKFTITVRQY 318
+YS ++ Y++LSK +S ++ +Y T++ N + Y TL + + + Y
Sbjct: 19 NYSTLSRNYLTLSKNYSTLSKNYLTLSKNYSTLSKNYLTLSKNYLTLSKNY 69
>SB_1509| Best HMM Match : SRR (HMM E-Value=0.22)
Length = 644
Score = 28.3 bits (60), Expect = 4.3
Identities = 14/51 (27%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Frame = +1
Query: 172 DYSGVANPYISLSKTFSEMNPDYFTMA-NKIYVGNKY-TLDEKFTITVRQY 318
+YS ++ Y++LSK +S ++ +Y T++ N + Y TL + + + Y
Sbjct: 19 NYSTLSRNYLTLSKNYSTLSKNYLTLSKNYSTLSKNYLTLSKNYLTLSKNY 69
Score = 27.5 bits (58), Expect = 7.6
Identities = 14/50 (28%), Positives = 32/50 (64%), Gaps = 3/50 (6%)
Frame = +1
Query: 172 DYSGVANPYISLSKTFSEMNPDYFTMA-NKIYVGNKY-TLDEKF-TITVR 312
+YS ++ Y++LSK +S ++ +Y T++ N + Y TL + + T++++
Sbjct: 112 NYSTLSKNYLTLSKNYSTLSKNYLTLSKNYSTLSKNYLTLSKNYLTLSIK 161
>SB_51901| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 447
Score = 27.5 bits (58), Expect = 7.6
Identities = 22/95 (23%), Positives = 33/95 (34%)
Frame = +1
Query: 115 KAGAGEGSRAEIDKFLGNGDYSGVANPYISLSKTFSEMNPDYFTMANKIYVGNKYTLDEK 294
K G G G E+ + N + L S N +K+Y+ + +D
Sbjct: 120 KHGFGYGKNGEVILVMPNERLNIKKIMVFELFSVLSGYNFLRILKVDKVYLKKLFLMDNA 179
Query: 295 FTITVRQYQSEVETIDFSDTKKAADIINQWANEKT 399
F+ + S VET F + N AN T
Sbjct: 180 FSTVPGEANSNVETQSFIEASVETFTENMLANHAT 214
>SB_49251| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1560
Score = 27.5 bits (58), Expect = 7.6
Identities = 16/52 (30%), Positives = 22/52 (42%)
Frame = -2
Query: 175 NLHCLKTCRSPHDYLHRRQLCTEALASSRLMVKTQHSCPSMMYTFP*ETAKK 20
N C +TCR+P +Y +LC S K ++ P F AKK
Sbjct: 620 NAQCRQTCRTPPNY---AELCGSLWISRITRKKPNYALPHKRVAFSNSQAKK 668
>SB_2329| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1181
Score = 27.5 bits (58), Expect = 7.6
Identities = 16/73 (21%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Frame = +1
Query: 178 SGVANPYISLSKTFSEMNPDYFTMANKIYVGNKYTLDEKFTITVRQYQSEVETIDFSDTK 357
S P+I + T NP++F ++ + + T DE + + + ++ I +K
Sbjct: 279 SNATTPFIVIQNTLEVKNPNFFEVSLSA-LNQQVTWDEHYVVADVSFGNQSVVIPRRSSK 337
Query: 358 KAADI--INQWAN 390
K + +NQ+ N
Sbjct: 338 KMEGLHDMNQYLN 350
>SB_44086| Best HMM Match : BTB (HMM E-Value=1.8e-23)
Length = 417
Score = 27.5 bits (58), Expect = 7.6
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +2
Query: 398 PEDILNLQSLMTP*IRMQLPRSSMLYSSRVTGTCLSTQVKLKRKISC 538
P+DIL + ++ LP+ S L+SS+ T LS+ + K C
Sbjct: 245 PKDILIKEEIIDIFAHYALPKVSDLFSSKARVTSLSSVTRFMSKEDC 291
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.315 0.131 0.375
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,558,153
Number of Sequences: 59808
Number of extensions: 337303
Number of successful extensions: 938
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 925
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1252112599
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.5 bits)
- SilkBase 1999-2023 -