Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_F07
         (721 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0836 - 28088832-28089422,28089626-28089831,28089985-28090330     28   1.2  
05_07_0106 + 27723877-27723978,27724825-27725100,27726103-27727281     29   4.9  
01_01_0106 + 788967-789555,790139-790162,790339-791411                 28   6.5  
01_05_0548 + 23149271-23149568,23149766-23149845,23150137-231502...    28   8.6  

>03_05_0836 - 28088832-28089422,28089626-28089831,28089985-28090330
          Length = 380

 Score = 27.9 bits (59), Expect(2) = 1.2
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -3

Query: 587 NGISGNIGLNVDGNTERLVVESWLTNLEVVWVTS 486
           NG +     +  G T+R+++ SWL+ LE+ + T+
Sbjct: 224 NGFTEAPETSNSGQTKRVLLSSWLSTLELAYTTA 257



 Score = 21.4 bits (43), Expect(2) = 1.2
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -3

Query: 455 VSGIKLAIVKECD*FLNDNIIDFNADEMKFL 363
           VSG ++A+  +    L+ N++  + DEM  L
Sbjct: 298 VSGTRIALGDDGSIALSRNVVVLHVDEMLLL 328


>05_07_0106 + 27723877-27723978,27724825-27725100,27726103-27727281
          Length = 518

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +1

Query: 61  NRMARKLISTMKRQLTLSETIGKRTPICMKKKLQRIINDLMKLS 192
           NR+ R L++  +++    E I +    CMKK+   ++N L  +S
Sbjct: 39  NRLLRSLVNIHEQETYSREIITEAIESCMKKQADNLVNTLDVIS 82


>01_01_0106 + 788967-789555,790139-790162,790339-791411
          Length = 561

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
 Frame = +3

Query: 519 PRLNHKPFSVTIDVXSDIATDA--VIKIFLGPKYNDXGFPITLEENWHKFYELDWFTHKI 692
           P L  + F V I   SD+ +    V+++  G +  D G      +N H+ Y L+W   K+
Sbjct: 437 PELYSRNFGV-ISYKSDVYSFGMLVLEMVSGRRNLDPGI-----DNQHEVYFLEWIYEKV 490

Query: 693 TPGQNKIV 716
             GQN ++
Sbjct: 491 FTGQNLLI 498


>01_05_0548 +
           23149271-23149568,23149766-23149845,23150137-23150223,
           23150421-23150729,23150774-23150899,23151977-23152360,
           23152603-23152608
          Length = 429

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 17/78 (21%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
 Frame = +3

Query: 414 LVTFFDYSQFDATNSVFLTK-----KEIKTSYPHNFKVRQPRLNHKPFSVTIDVXSDIAT 578
           L   F +S F ++++  + +      ++KT    ++ ++ PRL +   S+  DV + +  
Sbjct: 64  LAAVFSFSSFTSSSNYVIRECLGSVLDLKTVATIDWSMKTPRLQYYTSSMVDDVFTRLGE 123

Query: 579 DAVIKIFLGPKYNDXGFP 632
           D  +K +    Y   G P
Sbjct: 124 DIKVKPWAHTVYGKNGIP 141


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,410,409
Number of Sequences: 37544
Number of extensions: 363106
Number of successful extensions: 886
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 869
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 886
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)