Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_F06
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC800.07c |tsf1||mitochondrial translation elongation factor E...    26   5.5  
SPBC1198.10c |||asparagine-tRNA ligase Slm5|Schizosaccharomyces ...    26   5.5  
SPBC16G5.09 |||serine carboxypeptidase |Schizosaccharomyces pomb...    26   5.5  
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac...    26   5.5  
SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ...    25   7.2  
SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit ...    25   9.5  

>SPBC800.07c |tsf1||mitochondrial translation elongation factor
           EF-Ts Tsf1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 299

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 18/60 (30%), Positives = 31/60 (51%)
 Frame = -2

Query: 361 IVKKSGFISEKVLLRLMYGLVASL*STSPKNLSISTRLPSPAPDL*RSISIITPNGEDTT 182
           IVK + F  EKV ++ ++ + A + ST+    S   +  SP   L R  S++  N + +T
Sbjct: 184 IVKMTSFTGEKVQVQRLHCMNARVPSTAIGIFSHGAKQSSPLQQLGRIGSMVQINSDLST 243


>SPBC1198.10c |||asparagine-tRNA ligase Slm5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 441

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = +3

Query: 285 DYSEATNPYISLSKTFSEMNPDFFTMANKIYVGNKYTLDEKFTSSSRQYQSE 440
           D  +A   + S SK F+E NP   T ++    G  +TL  + T  ++ ++ +
Sbjct: 141 DSLKALRQFFS-SKDFTETNPPIITSSDCEGAGEVFTLTPQETHKNKSFERD 191


>SPBC16G5.09 |||serine carboxypeptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 510

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 213 LMLLYKSGAGEGSRVEIDKFLGDVDYSEATNP 308
           L+   K G+G G   + + FLGD+ Y  +  P
Sbjct: 243 LLAFDKIGSGSGDLSKCESFLGDILYMVSKEP 274


>SPCC736.14 |dis1||microtubule-associated protein Dis1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 882

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 18/53 (33%), Positives = 24/53 (45%)
 Frame = -2

Query: 301 VASL*STSPKNLSISTRLPSPAPDL*RSISIITPNGEDTTFLSFPDVYASLRS 143
           VAS   TSP  L+++ + PSP P    S + +T     T          SLRS
Sbjct: 549 VASPLKTSPVKLAVTPQAPSPLPSSNPSQASLTEESLSTRSSPTKPSTTSLRS 601


>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 817

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 16/68 (23%), Positives = 31/68 (45%)
 Frame = +3

Query: 171 KDKNVVSSPLGVMMLMLLYKSGAGEGSRVEIDKFLGDVDYSEATNPYISLSKTFSEMNPD 350
           ++ N +   +  +   L  ++   E  +  +D+   +V   E+TN   +L  T   +  D
Sbjct: 367 EENNSLKQQIEQLQRELASETVVKENLKSSLDQQSANVQKLESTNR--ALESTIKTLEED 424

Query: 351 FFTMANKI 374
            +TM NKI
Sbjct: 425 VYTMKNKI 432


>SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit
           Bdp1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 507

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 22/93 (23%), Positives = 43/93 (46%), Gaps = 8/93 (8%)
 Frame = +3

Query: 252 RVEIDKFLGDVDYS-----EATNPYISLSKTFSEMNP---DFFTMANKIYVGNKYTLDEK 407
           ++E+D    + +YS        N  I L +T  E++    DF     + YV  + +L  +
Sbjct: 295 KMEVDGLNNNSNYSATPRTRVVNGQIVLDETSLEVDRHERDFVPAEEREYV-EENSLSRR 353

Query: 408 FTSSSRQYQSEVETIDFSDTKKAADIINQWANE 506
            TS++   + + E  +  DT+K    ++QW  +
Sbjct: 354 VTSATWGNRQKPEKWNAMDTEKFYKALSQWGTD 386


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,673,861
Number of Sequences: 5004
Number of extensions: 55508
Number of successful extensions: 162
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)