Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_F05
(631 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 27 2.2
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb... 27 3.0
SPBC3D6.07 |gpi3||pig-A|Schizosaccharomyces pombe|chr 2|||Manual 27 3.0
SPCC11E10.06c |||RNA polymerase II elongator complex subunit Elp... 26 3.9
SPAC26A3.02 |myh1|myh|adenine DNA glycosylase |Schizosaccharomyc... 26 3.9
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe... 26 3.9
SPBC21B10.12 |rec6||meiotic recombination protein Rec6|Schizosac... 26 5.2
SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces p... 26 5.2
SPBC887.11 |pus2||tRNA pseudouridylate synthase Pus2 |Schizosacc... 25 6.8
SPACUNK12.02c |cmk1||calcium/calmodulin-dependent protein kinase... 25 9.0
SPCC1442.07c |||ubiquitin/metalloprotease fusion protein|Schizos... 25 9.0
SPBC3H7.10 |||elongator homolog|Schizosaccharomyces pombe|chr 2|... 25 9.0
SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces... 25 9.0
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc... 25 9.0
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 27.1 bits (57), Expect = 2.2
Identities = 20/64 (31%), Positives = 32/64 (50%)
Frame = +3
Query: 354 TPAQVLDKKDATLSEIYYSVYALKALGKGSVFDKEDALKNLIQLLKKDDSPVNYGYVFAL 533
T A ++ DAT + V L+ LG + + LK L +++ D S VNY ++ L
Sbjct: 1320 TEAMTVEGVDATRTYSNSFVEILQILGIEAT--RSALLKELRNVIEFDGSYVNYRHLALL 1377
Query: 534 CEHM 545
C+ M
Sbjct: 1378 CDVM 1381
>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 26.6 bits (56), Expect = 3.0
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = -1
Query: 493 FFNNCMRFFKASSLS 449
F NNC++F+KA SL+
Sbjct: 632 FLNNCLKFYKAFSLT 646
>SPBC3D6.07 |gpi3||pig-A|Schizosaccharomyces pombe|chr 2|||Manual
Length = 456
Score = 26.6 bits (56), Expect = 3.0
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = +3
Query: 150 EDSLKSKDISSLYYAVKGLKLLKAPIPDICEDIKTIKY 263
+D L IS LYY KG+ LL A IP IC +++
Sbjct: 188 KDFLTIVVISRLYYN-KGIDLLIAVIPRICAQHPKVRF 224
>SPCC11E10.06c |||RNA polymerase II elongator complex subunit Elp4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 361
Score = 26.2 bits (55), Expect = 3.9
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +3
Query: 108 LAGTIELKRLQSILEDSLKSKDISSLYYAVKGLK 209
L+G I +K L I EDS+ + ++A +GLK
Sbjct: 42 LSGGIPMKSLLVIEEDSMDYASVLLKFFAAEGLK 75
>SPAC26A3.02 |myh1|myh|adenine DNA glycosylase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 461
Score = 26.2 bits (55), Expect = 3.9
Identities = 13/58 (22%), Positives = 29/58 (50%)
Frame = +3
Query: 231 DICEDIKTIKYDVKNIEQIFQLTNAAALTDCVNFLKPEVLSTPAQVLDKKDATLSEIY 404
++ D TIKYD++++ +T+ + D N++ PA+ +++ L I+
Sbjct: 249 NVIRDGNTIKYDIEDVPCNICITDIPSKEDLQNWVVARYPVHPAKTKQREERALVVIF 306
>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 972
Score = 26.2 bits (55), Expect = 3.9
Identities = 19/67 (28%), Positives = 32/67 (47%)
Frame = +3
Query: 366 VLDKKDATLSEIYYSVYALKALGKGSVFDKEDALKNLIQLLKKDDSPVNYGYVFALCEHM 545
V D L+ +Y +Y + K +K K + ++LKK DS V+ +A EH+
Sbjct: 582 VFSADDEYLASVYL-IYLKQMETKNLSEEKPQVNKIVKKILKKYDSSVSVWNTYAQLEHL 640
Query: 546 GCGTWTV 566
G +T+
Sbjct: 641 S-GAFTM 646
>SPBC21B10.12 |rec6||meiotic recombination protein
Rec6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 25.8 bits (54), Expect = 5.2
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 87 AISNANILAGTIELKRLQSILEDSLKSKDISSLYY 191
A+SNANI+AG+I + L+ S + L Y
Sbjct: 43 AMSNANIIAGSISRILTRESLDKSFEQSHFQLLMY 77
>SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1028
Score = 25.8 bits (54), Expect = 5.2
Identities = 18/57 (31%), Positives = 28/57 (49%)
Frame = +3
Query: 327 NFLKPEVLSTPAQVLDKKDATLSEIYYSVYALKALGKGSVFDKEDALKNLIQLLKKD 497
NFL PE + P+ V K+D+ ++ +V A+ A GS + L + I L D
Sbjct: 209 NFLSPEFIKKPSMVDHKRDSEIN----AVTAVSA--DGSFSPLTETLSSTISTLSND 259
>SPBC887.11 |pus2||tRNA pseudouridylate synthase Pus2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 25.4 bits (53), Expect = 6.8
Identities = 32/101 (31%), Positives = 44/101 (43%), Gaps = 6/101 (5%)
Frame = +3
Query: 231 DICEDIKTIKYDVKNIEQIFQLTNAAALTDCVN--FLK---PEVLSTPAQVLDKKDATLS 395
D+ T+K K I+++F TN A T+ F + P + P Q KK +
Sbjct: 201 DLISFWNTVKLKQKEIQEMFD-TNKDAFTNPFKGMFYEKPIPAGIVIPPQAKLKKALKQA 259
Query: 396 EIY-YSVYALKALGKGSVFDKEDALKNLIQLLKKDDSPVNY 515
E Y Y Y +K ED LK L QLLKK + N+
Sbjct: 260 EYYCYMNYRIK----------EDRLKVLQQLLKKYEGRHNF 290
>SPACUNK12.02c |cmk1||calcium/calmodulin-dependent protein kinase
Cmk1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 25.0 bits (52), Expect = 9.0
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +3
Query: 411 VYALKALGKGSVFDKEDALKNLIQLLKK 494
+YA K + K + K+D +KN I +LK+
Sbjct: 56 MYAAKIMNKKMMEKKQDFVKNEIAILKR 83
>SPCC1442.07c |||ubiquitin/metalloprotease fusion
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 282
Score = 25.0 bits (52), Expect = 9.0
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 6/55 (10%)
Frame = +3
Query: 366 VLDKKDATLSEIYYSVYALKALGKGSVFDK---EDALKN---LIQLLKKDDSPVN 512
VLD K+ EI S +K L KG++ D +D +KN ++ L+++D VN
Sbjct: 22 VLDAKEKLGQEIDVSPSLIKLLYKGNLSDDSHLQDVVKNESKIMCLIRQDKDIVN 76
>SPBC3H7.10 |||elongator homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 249
Score = 25.0 bits (52), Expect = 9.0
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +1
Query: 484 C*RRMILLLTMGTFLPYANTWDAARGLLLMRRVCCWPL 597
C R+I+ +T+G LP + ++ G + R + C PL
Sbjct: 155 CFSRVIVNVTLGAPLPQQKSLGSSIGHMATRCISCRPL 192
>SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 471
Score = 25.0 bits (52), Expect = 9.0
Identities = 14/63 (22%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Frame = +3
Query: 300 NAAALTDCVNF-LKPEVLSTPAQVLDKKDATLSEIYYSVYALKALGKGSVFDKEDALKNL 476
N A +C++ + E++S+ A+ D + Y+L + +F K ++
Sbjct: 314 NTIAFGNCLDEKFEEEIISSTARSFFLGDEVKKRLLLGAYSLARMNSSDLFSKARYVRRA 373
Query: 477 IQL 485
IQL
Sbjct: 374 IQL 376
>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1576
Score = 25.0 bits (52), Expect = 9.0
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = +3
Query: 309 ALTDCVNFLKPEVLSTPAQVLDKKDATLSEIYYSVYALKAL 431
+L DCV L+ +STP + + E+ Y + +LK +
Sbjct: 260 SLQDCVFLLRTVRISTPYWSTEDGKREIQELEYELESLKVI 300
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,422,450
Number of Sequences: 5004
Number of extensions: 45477
Number of successful extensions: 155
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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