Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_F05
         (631 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0727 + 31264798-31265297,31265962-31266417,31266503-31266938     36   0.020
01_01_1137 + 9017211-9018584                                           31   0.75 
01_05_0495 + 22705697-22705765,22705903-22706025,22708429-227085...    30   1.7  
05_01_0055 - 390371-390457,390637-390715,390804-390856,390951-39...    29   4.0  
03_06_0449 - 34013973-34014056,34014595-34014630,34014729-340148...    29   4.0  
01_07_0290 - 42542201-42542359,42542443-42542551,42542729-425435...    29   4.0  
01_07_0014 - 40455673-40455723,40455815-40455892,40455987-404560...    29   4.0  
11_06_0361 - 22711200-22712180,22712523-22712729,22715205-227159...    27   9.3  

>02_05_0727 + 31264798-31265297,31265962-31266417,31266503-31266938
          Length = 463

 Score = 36.3 bits (80), Expect = 0.020
 Identities = 15/26 (57%), Positives = 18/26 (69%)
 Frame = +3

Query: 495 DDSPVNYGYVFALCEHMGCGTWTVTH 572
           D SP  YG+VF  C+H+  GT TVTH
Sbjct: 254 DVSPDFYGWVFPKCDHVAVGTGTVTH 279


>01_01_1137 + 9017211-9018584
          Length = 457

 Score = 31.1 bits (67), Expect = 0.75
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +3

Query: 495 DDSPVNYGYVFALCEHMGCGTWTV 566
           D SP  YG+VF  C+H+  GT TV
Sbjct: 235 DVSPDFYGWVFPKCDHVAVGTGTV 258


>01_05_0495 + 22705697-22705765,22705903-22706025,22708429-22708586,
            22709162-22709206,22709367-22709445,22709522-22709595,
            22709703-22709809,22711116-22711301,22711882-22711920,
            22712020-22712086,22712207-22712281,22713113-22713347,
            22713425-22713755,22714530-22714710,22714810-22714950,
            22715041-22715302,22715503-22715892,22717179-22717735,
            22718421-22718557,22718672-22718853,22718959-22719339,
            22719420-22719545,22719635-22719700,22720056-22721839,
            22721914-22722193,22722386-22722616,22723067-22723588,
            22723683-22723815,22723937-22724193
          Length = 2405

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
 Frame = +3

Query: 144  ILEDSLKSKDISSLYYAVKGLKLL-KAPIPDICEDIKTIKYDVKNIEQIFQLTNAAALTD 320
            +L + L SK  S L  + + L LL K P+P + ++   IK  + +I Q    +N   +T 
Sbjct: 1762 LLAECLSSKHESVLSISFRCLALLIKLPLPSLKDNANLIKNVLMDIAQRAGNSNGHLVTS 1821

Query: 321  CVNFL 335
            C+  L
Sbjct: 1822 CLKLL 1826


>05_01_0055 -
           390371-390457,390637-390715,390804-390856,390951-391105,
           391216-391422,391518-391658,392044-392202,392296-392476,
           393153-393252,393321-393470,393581-393705,394006-394096,
           394364-394472,394558-394657,395143-395307,395401-395506,
           395590-395894,396003-396241,397036-397114,397189-397327,
           398004-398054,398316-398770,398961-399158,399199-399261,
           400212-400436,400706-400988,401109-401170
          Length = 1368

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 10/40 (25%), Positives = 21/40 (52%)
 Frame = -1

Query: 319 SVKAAALVSWKICSMFFTSYLIVLISSHISGMGAFNNFNP 200
           +V    + +W++CS     Y++ ++   +   GA  NF+P
Sbjct: 253 AVAEGLIYTWRLCSYASPKYMLWIVGYILVAGGAIRNFSP 292


>03_06_0449 -
           34013973-34014056,34014595-34014630,34014729-34014816,
           34015034-34015143,34015611-34015715,34015812-34015903,
           34016145-34016232,34016407-34016526,34016603-34016721,
           34017253-34018126
          Length = 571

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
 Frame = -1

Query: 502 ESSFFNNCMRFFKASSLSNTEPFPRAFKA*TE*YISDSVASFLSSTCA--GVERTSGFKK 329
           E + F N + FF A+ +S++ P P   +       +   +S L++     GV RTS    
Sbjct: 369 EENVFRNKLEFFAAAKISSSFPPPTLPEIAFAGVSNVGKSSLLNALTRQWGVVRTSDKPG 428

Query: 328 LTQSVKAAALVSWKICSMFFTSY 260
           LTQ++    L S K+C +    Y
Sbjct: 429 LTQTINFFRLAS-KLCLVDLPGY 450


>01_07_0290 - 42542201-42542359,42542443-42542551,42542729-42543516,
            42543601-42543744,42543840-42544013,42544056-42544369,
            42544467-42544636,42544916-42545043,42545125-42545185,
            42545473-42545642,42545783-42547387,42547479-42547631,
            42547747-42547905,42548066-42548236,42548357-42548404,
            42548509-42548624,42548885-42549029,42549122-42549220
          Length = 1570

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 14/52 (26%), Positives = 28/52 (53%)
 Frame = +3

Query: 222  PIPDICEDIKTIKYDVKNIEQIFQLTNAAALTDCVNFLKPEVLSTPAQVLDK 377
            P+ D+ +  +++ YD++ + Q+F +++A      V  L P +L    Q L K
Sbjct: 1067 PVMDLIDTTRSMPYDIQQVRQVFGISSAFEKVTQVQ-LFPFLLLAEIQYLSK 1117


>01_07_0014 -
           40455673-40455723,40455815-40455892,40455987-40456049,
           40456250-40456390,40456851-40456949,40457403-40457477,
           40457556-40457652,40457738-40457805,40458456-40458512,
           40458613-40458671,40458798-40458921,40459208-40459264,
           40459378-40459457,40459585-40459793,40459868-40459986
          Length = 458

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +3

Query: 372 DKKDATLSEIYYSVYALKALGKGSVFDKEDALKNL 476
           D+++  + E+  +  A KAL KG+V D  D LK L
Sbjct: 65  DEEEEEVDEVAQAKAAAKALAKGAVDDVADELKEL 99


>11_06_0361 - 22711200-22712180,22712523-22712729,22715205-22715903,
            22717848-22717979,22720422-22721180,22721241-22721453
          Length = 996

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = +3

Query: 438  GSVFDKEDALKNLIQLLKKDDSPVNYGYVFALCEHMGC 551
            G  F KE  LKNL QL K   S +N+  +  LC  + C
Sbjct: 916  GKAFLKE--LKNLTQLRKLGVSGINWKNIQELCSAVSC 951


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,562,731
Number of Sequences: 37544
Number of extensions: 258046
Number of successful extensions: 635
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)