Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_F05
(631 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_44821| Best HMM Match : Ribophorin_II (HMM E-Value=3.5e-15) 44 1e-04
SB_50263| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_796| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_42540| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_26806| Best HMM Match : Annexin (HMM E-Value=0) 28 5.4
SB_41383| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_54638| Best HMM Match : Cache (HMM E-Value=0.0031) 28 7.2
SB_46549| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
SB_490| Best HMM Match : C1_1 (HMM E-Value=1.3) 27 9.5
>SB_44821| Best HMM Match : Ribophorin_II (HMM E-Value=3.5e-15)
Length = 512
Score = 44.0 bits (99), Expect = 1e-04
Identities = 37/151 (24%), Positives = 72/151 (47%), Gaps = 2/151 (1%)
Frame = +3
Query: 87 AISNANILAGTIELKRLQSILEDSLKSKDISSLYYAVKGLKLLKAPIPDICEDIKTIKYD 266
A A++L+ E RL+ +++ +D+ + +YA+KGLK KAP+P K ++ +
Sbjct: 19 AAKPASVLS-VAEQARLRQTFQEAAPFRDLETAHYALKGLKFFKAPMPPNQNVCKFVEDN 77
Query: 267 VKNIEQIFQLTNAAALTDCVNFLKPEVLSTPAQVLD--KKDATLSEIYYSVYALKALGKG 440
V I + +A+++ + + + + D ++ A S I+Y+V +L L G
Sbjct: 78 VDR-SSILSVYHASSIIKVLGNCQLNLKDAEQMLADSIQEGAPTSTIFYAVSSLSNL--G 134
Query: 441 SVFDKEDALKNLIQLLKKDDSPVNYGYVFAL 533
D LK + D+ V+ +FA+
Sbjct: 135 LKIDSAAVLKAVRAASSSDEDSVS-SAIFAM 164
>SB_50263| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 391
Score = 28.3 bits (60), Expect = 5.4
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -2
Query: 462 HPLYQTRNLSLELLKHKQNNIF 397
HPLY+ RN+S+ LL+ N ++
Sbjct: 125 HPLYKRRNISIHLLRGVHNFVY 146
>SB_796| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 319
Score = 28.3 bits (60), Expect = 5.4
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +3
Query: 264 DVKNIEQIFQLTNAAALTDCVNFLKPEVLSTPAQVLDKKD 383
D+ I +I + +TD NF LST QVL+K D
Sbjct: 258 DILKISKITPVDKGGEITDPFNFRPISTLSTFTQVLEKLD 297
>SB_42540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1471
Score = 28.3 bits (60), Expect = 5.4
Identities = 21/91 (23%), Positives = 41/91 (45%), Gaps = 4/91 (4%)
Frame = +3
Query: 186 YYAVKGLKLLKAPIPDICEDIKTIKYD-VKNIEQIFQLTNAAALTDCVNFLK---PEVLS 353
Y+ + KL + I + +I + ++ +KN F LT+ + V F K P+
Sbjct: 841 YFEKENRKLDERDIQTLTLEIGKVAFENLKNNAVTFSLTDVSEDLKRVGFFKRQKPQCAI 900
Query: 354 TPAQVLDKKDATLSEIYYSVYALKALGKGSV 446
P ++ + + + +VY + LG+G V
Sbjct: 901 RPVEMFSFFHKSFQDYFCAVYLARRLGQGVV 931
>SB_26806| Best HMM Match : Annexin (HMM E-Value=0)
Length = 829
Score = 28.3 bits (60), Expect = 5.4
Identities = 19/60 (31%), Positives = 33/60 (55%)
Frame = +3
Query: 141 SILEDSLKSKDISSLYYAVKGLKLLKAPIPDICEDIKTIKYDVKNIEQIFQLTNAAALTD 320
S+L + K+ D+ SLYYA+KGL +A + +I +++ I+Q + +LTD
Sbjct: 508 SLLLPATKA-DVRSLYYAMKGLGTKEAQLIEIL--CTRSNAEIQEIKQEYNKKYGRSLTD 564
>SB_41383| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1995
Score = 27.9 bits (59), Expect = 7.2
Identities = 18/67 (26%), Positives = 28/67 (41%)
Frame = +3
Query: 216 KAPIPDICEDIKTIKYDVKNIEQIFQLTNAAALTDCVNFLKPEVLSTPAQVLDKKDATLS 395
K I +C D+ + + + LT L D ++L E + L+KK ATL
Sbjct: 1126 KYDIQGVCNDVDCAYQHLTD----YMLTETETLEDLASYLSEEKAKKTREELEKKVATLV 1181
Query: 396 EIYYSVY 416
+ S Y
Sbjct: 1182 GFFKSQY 1188
>SB_54638| Best HMM Match : Cache (HMM E-Value=0.0031)
Length = 598
Score = 27.9 bits (59), Expect = 7.2
Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 7/68 (10%)
Frame = +3
Query: 264 DVKNIEQI-FQLTNAAALTDCVNFLKPE------VLSTPAQVLDKKDATLSEIYYSVYAL 422
+V I+++ F L D N L P+ VLS P + KK+ + S I+ SVY L
Sbjct: 95 EVDGIDKLDFSDGTTNTLEDLYNELNPDKRSYIRVLSRPMAMAPKKNTSESVIWTSVY-L 153
Query: 423 KALGKGSV 446
A+G G V
Sbjct: 154 DAIGLGMV 161
>SB_46549| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 264
Score = 27.5 bits (58), Expect = 9.5
Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 1/96 (1%)
Frame = +3
Query: 231 DICEDIKTIKYDVKNIEQIFQLTNAAALTDCVN-FLKPEVLSTPAQVLDKKDATLSEIYY 407
D+C +K+ +D+K + ++ L +ALTD + FL P V+ V+ TL+
Sbjct: 99 DVCRRVKSCSHDLKQLSRL--LGMVSALTDNSSLFLDPYVIQLVTAVMYCLLETLTVSLN 156
Query: 408 SVYALKALGKGSVFDKEDALKNLIQLLKKDDSPVNY 515
V L + DA L L +K +PVNY
Sbjct: 157 PVNDHWRL-------RRDAACILAYLSRKCSNPVNY 185
>SB_490| Best HMM Match : C1_1 (HMM E-Value=1.3)
Length = 256
Score = 27.5 bits (58), Expect = 9.5
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Frame = -2
Query: 498 HPSSTTV*GSLKHPLYQTRNLSLELLKHKQNNIFLTVLHLFYQALVLE*KELQA--SKN* 325
HPS+ G + HP +LS L + KQ + F +L ++ + V E + L++ +
Sbjct: 141 HPSTIEESGDVIHPSTIVLSLSPTLTECKQRSAFNRLLKVYEEKPVCEGRTLESYLTFPM 200
Query: 324 HNQLKQLH 301
H +Q+H
Sbjct: 201 HRSTEQIH 208
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,497,980
Number of Sequences: 59808
Number of extensions: 317447
Number of successful extensions: 933
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 933
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1572561250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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