Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_F05
         (631 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024880-3|AAF60915.3|  675|Caenorhabditis elegans Hypothetical ...    31   0.51 
AL117204-9|CAB55124.1|  358|Caenorhabditis elegans Hypothetical ...    31   0.68 
U61947-2|AAB03135.1|  498|Caenorhabditis elegans Hypothetical pr...    28   4.8  
AY350451-1|AAQ54691.1|  332|Caenorhabditis elegans calcium/calmo...    27   8.4  
AF099924-1|AAF23187.1|  348|Caenorhabditis elegans Cam kinase pr...    27   8.4  
AB021864-1|BAA82674.1|  348|Caenorhabditis elegans Ca2+/calmodul...    27   8.4  

>AC024880-3|AAF60915.3|  675|Caenorhabditis elegans Hypothetical
           protein Y97E10AR.1 protein.
          Length = 675

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 18/59 (30%), Positives = 30/59 (50%)
 Frame = +3

Query: 363 QVLDKKDATLSEIYYSVYALKALGKGSVFDKEDALKNLIQLLKKDDSPVNYGYVFALCE 539
           +VL K+    S+I+   Y  + +     FDK +A  +L++ L  +D   NY  VF + E
Sbjct: 528 EVLRKQSRVFSKIFEQTY--EPITIPLTFDKFEAFSSLLEFLHGEDIYFNYNNVFKIIE 584


>AL117204-9|CAB55124.1|  358|Caenorhabditis elegans Hypothetical
           protein Y116A8C.18 protein.
          Length = 358

 Score = 31.1 bits (67), Expect = 0.68
 Identities = 17/47 (36%), Positives = 32/47 (68%), Gaps = 1/47 (2%)
 Frame = +3

Query: 123 ELKRLQSILEDSLKSKDISSLYYAVKGLKLLKAPIPD-ICEDIKTIK 260
           +LK LQS LE +L+  +++ L+  V+  +LLK+ + + + E IK++K
Sbjct: 188 QLKDLQSKLERNLELVELNKLHEEVQSERLLKSEVAEKLAELIKSVK 234


>U61947-2|AAB03135.1|  498|Caenorhabditis elegans Hypothetical
           protein C06G3.6 protein.
          Length = 498

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = +3

Query: 378 KDATLSEIYYSVYALKALGKGSVFDKEDALKNLIQLLK 491
           +D T  ++ + V   ++   GS+F  ED+L +L ++LK
Sbjct: 431 EDDTTRKVEFEVETAESNYPGSIFSDEDSLSDLAEILK 468


>AY350451-1|AAQ54691.1|  332|Caenorhabditis elegans
           calcium/calmodulin-dependent proteinkinase 1 protein.
          Length = 332

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 11/28 (39%), Positives = 22/28 (78%)
 Frame = +3

Query: 411 VYALKALGKGSVFDKEDALKNLIQLLKK 494
           +YA+K + K ++  KE++L+N I++L+K
Sbjct: 32  MYAVKCIDKKALKGKEESLENEIKVLRK 59


>AF099924-1|AAF23187.1|  348|Caenorhabditis elegans Cam kinase
           protein 1 protein.
          Length = 348

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 11/28 (39%), Positives = 22/28 (78%)
 Frame = +3

Query: 411 VYALKALGKGSVFDKEDALKNLIQLLKK 494
           +YA+K + K ++  KE++L+N I++L+K
Sbjct: 48  MYAVKCIDKKALKGKEESLENEIKVLRK 75


>AB021864-1|BAA82674.1|  348|Caenorhabditis elegans
           Ca2+/calmodulin-dependent proteinkinase I protein.
          Length = 348

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 11/28 (39%), Positives = 22/28 (78%)
 Frame = +3

Query: 411 VYALKALGKGSVFDKEDALKNLIQLLKK 494
           +YA+K + K ++  KE++L+N I++L+K
Sbjct: 48  MYAVKCIDKKALKGKEESLENEIKVLRK 75


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,237,189
Number of Sequences: 27780
Number of extensions: 252997
Number of successful extensions: 601
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 601
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)