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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_F05
         (631 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g74470.1 68414.m08627 geranylgeranyl reductase identical to g...    38   0.007
At1g03290.1 68414.m00307 expressed protein ESTs gb|H36966, gb|R6...    33   0.16 
At1g50970.1 68414.m05730 membrane trafficking VPS53 family prote...    31   0.63 
At5g20420.1 68418.m02428 SNF2 domain-containing protein / helica...    28   5.9  

>At1g74470.1 68414.m08627 geranylgeranyl reductase identical to
           geranylgeranyl reductase GB:Y14044 [Arabidopsis
           thaliana] (involvement: chlorophyll, the tocopherol and
           the phylloquinone pathways Eur J Biochem 1998 Jan
           15;251(1-2):413-7)
          Length = 467

 Score = 37.5 bits (83), Expect = 0.007
 Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
 Frame = +3

Query: 450 DKEDALKNLIQLLKKDD-SPVNYGYVFALCEHMGCGTWTVTH 572
           +K    ++L ++   DD SP  YG+VF  C+H+  GT TVTH
Sbjct: 242 EKMTYYEDLAEMYVGDDVSPDFYGWVFPKCDHVAVGTGTVTH 283


>At1g03290.1 68414.m00307 expressed protein ESTs gb|H36966,
           gb|R65511, gb|T42324 and gb|T20569 come from this gene
          Length = 571

 Score = 33.1 bits (72), Expect = 0.16
 Identities = 25/96 (26%), Positives = 47/96 (48%)
 Frame = +3

Query: 87  AISNANILAGTIELKRLQSILEDSLKSKDISSLYYAVKGLKLLKAPIPDICEDIKTIKYD 266
           A   AN+     E K LQ   E++ K +D   L    + +  L+  I  IC+D+K +K  
Sbjct: 431 AEQEANMEKVVQESKLLQQEAEENSKLRDF--LMDRGQIVDTLQGEISVICQDVKLLKEK 488

Query: 267 VKNIEQIFQLTNAAALTDCVNFLKPEVLSTPAQVLD 374
            +N   + +  +++  + C + +K  VL  P++ L+
Sbjct: 489 FENRVPLTKSISSSFTSSCGSSMKSLVLENPSERLN 524


>At1g50970.1 68414.m05730 membrane trafficking VPS53 family protein
           contains Pfam domain PF04100: Vps53-like, N-terminal
          Length = 569

 Score = 31.1 bits (67), Expect = 0.63
 Identities = 30/123 (24%), Positives = 57/123 (46%), Gaps = 3/123 (2%)
 Frame = +3

Query: 132 RLQSILEDSL-KSKDISSLYYAVKG-LKLLKAPIPDICEDIKTIKYDVKNIEQIFQLTNA 305
           R +  L D++  ++++S     +K   +  +A + DIC DIK + +  KNI     +T  
Sbjct: 54  RAKENLNDAICAAEELSHKIQEIKSKAEQTEAMVQDICSDIKKLDFAKKNITT--AVTAL 111

Query: 306 AALTDCVNFLKPEVLSTPAQVLDKKDATLSEIYYSVYALKA-LGKGSVFDKEDALKNLIQ 482
           + LT  V+ ++   + T  +   +    L  I       KA +    + +  + LKN+ Q
Sbjct: 112 SRLTMLVSAVQQLQVMTSKRQYKEAATQLEAINELCNHFKAYMDLPKIMELREKLKNIKQ 171

Query: 483 LLK 491
           +LK
Sbjct: 172 ILK 174


>At5g20420.1 68418.m02428 SNF2 domain-containing protein / helicase
           domain-containing protein low similarity to SP|Q9U7E0
           Transcriptional regulator ATRX homolog {Caenorhabditis
           elegans}; contains PFam profiles PF00271: Helicase
           conserved C-terminal domain, PF00176: SNF2 family
           N-terminal domain
          Length = 1261

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 9/28 (32%), Positives = 20/28 (71%)
 Frame = +3

Query: 264 DVKNIEQIFQLTNAAALTDCVNFLKPEV 347
           D++  +++   +  AAL+DC+ FL+P++
Sbjct: 52  DIRPFQRLRLRSRKAALSDCICFLRPDI 79


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,254,171
Number of Sequences: 28952
Number of extensions: 224082
Number of successful extensions: 534
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 534
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1285411824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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