Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_F04
         (628 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    23   1.6  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    23   2.1  
AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6 prot...    21   8.4  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    21   8.4  

>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 21/83 (25%), Positives = 31/83 (37%), Gaps = 1/83 (1%)
 Frame = +1

Query: 100 PTGAPPSACFDMIPGHAADVQTVPAPYTITT-AVSSVKAGHSIDVVISGKTPEDKMAGIL 276
           P  AP SA   +           P P T ++ + +SV +  S  + I  K       G++
Sbjct: 11  PPPAPQSAATPISSSGMTSPAAAPPPATTSSGSPASVASNASAPLHIPAKRAAYDCEGVI 70

Query: 277 LEARQGDKIVGTWTVSPDDTFSQ 345
                     G W  SPD+ F Q
Sbjct: 71  RHH-------GQWNYSPDNHFEQ 86


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +1

Query: 397 KELDRQTVSYPWTAPKDLEGDVVFKVTIVKSYAV 498
           K +  Q +  PWTAP+ ++     K  I K Y++
Sbjct: 450 KNMPSQYIHEPWTAPEQVQR--AAKCIIGKDYSL 481


>AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = -1

Query: 394 HASCGSRRYLVH 359
           HA+CG++  L+H
Sbjct: 357 HATCGTKNALLH 368


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 9/34 (26%), Positives = 17/34 (50%)
 Frame = +2

Query: 80  WRLPALTPPEHRLARAST*SQGTLLMFRQYQRLT 181
           W L +  PP ++++   T SQ    +++    LT
Sbjct: 324 WSLTSSPPPPYQISAQPTPSQSPNQIYQPVTNLT 357


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,188
Number of Sequences: 336
Number of extensions: 3580
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16083914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)