Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_F04
         (628 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g52550.1 68418.m06525 expressed protein                             30   1.1  
At2g02120.1 68415.m00148 plant defensin-fusion protein, putative...    29   1.9  
At5g10080.1 68418.m01168 aspartyl protease family protein contai...    29   3.3  
At5g50200.3 68418.m06216 expressed protein similar to unknown pr...    28   4.4  
At5g50200.2 68418.m06218 expressed protein similar to unknown pr...    28   4.4  
At5g50200.1 68418.m06217 expressed protein similar to unknown pr...    28   4.4  
At5g06580.1 68418.m00743 FAD linked oxidase family protein simil...    27   7.7  
At4g04920.1 68417.m00715 expressed protein                             27   7.7  

>At5g52550.1 68418.m06525 expressed protein
          Length = 360

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 14/52 (26%), Positives = 23/52 (44%)
 Frame = -2

Query: 198 DSCSDGVRRWYCLNISSVPWDHVEARARRCSGGVSAGKRHHRCNCYYVSEHH 43
           + C D  R          PWD+   +    SGG++    H RC+ Y V +++
Sbjct: 250 EDCDDSYRNTLNQETGFKPWDYT-TKINLFSGGINRFFPHQRCSSYAVHDNN 300


>At2g02120.1 68415.m00148 plant defensin-fusion protein, putative
           (PDF2.1) plant defensin protein family member, personal
           communication, Bart Thomma
           (Bart.Thomma@agr.kuleuven.ac.be); contains a
           gamma-thionin family signature (PDOC00725)
          Length = 77

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
 Frame = -1

Query: 316 SKCRRSCHPDELPGG-CRPFCLRVFC 242
           + C   CH +  PGG CR F  R FC
Sbjct: 48  TNCENVCHNEGFPGGDCRGFRRRCFC 73


>At5g10080.1 68418.m01168 aspartyl protease family protein contains
           Eukaryotic and viral aspartyl proteases active site,
           PROSITE:PS00141
          Length = 528

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = +1

Query: 106 GAPPSACF-DMIPGHAADVQTVPAPYTITTAVSSVKAGHSIDVVISGKTP 252
           G  PS C  D I    A   +  +P  + T     + GH++   I+GKTP
Sbjct: 447 GWSPSKCQEDKIEPPQASPGSTSSPNPLPTDEQQSRGGHAVSPAIAGKTP 496


>At5g50200.3 68418.m06216 expressed protein similar to unknown
           protein (pir||T05562) isoform contains a non-consensus
           AT acceptor splice site at intron 1
          Length = 210

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = +1

Query: 382 HKMHAKELDRQTVSYPWTAPKDLEGDVVFKVTIVKSYAVFWVGIESA 522
           HK+ AK  D+   S  WT  +D+     F    V++YAV  +G E A
Sbjct: 110 HKIIAKPYDKTLQSTTWTLERDIPTGTYF----VRAYAVDAIGHEVA 152


>At5g50200.2 68418.m06218 expressed protein similar to unknown
           protein (pir||T05562) isoform contains a non-consensus
           AT acceptor splice site at intron 1
          Length = 210

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = +1

Query: 382 HKMHAKELDRQTVSYPWTAPKDLEGDVVFKVTIVKSYAVFWVGIESA 522
           HK+ AK  D+   S  WT  +D+     F    V++YAV  +G E A
Sbjct: 110 HKIIAKPYDKTLQSTTWTLERDIPTGTYF----VRAYAVDAIGHEVA 152


>At5g50200.1 68418.m06217 expressed protein similar to unknown
           protein (pir||T05562) isoform contains a non-consensus
           AT acceptor splice site at intron 1
          Length = 210

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = +1

Query: 382 HKMHAKELDRQTVSYPWTAPKDLEGDVVFKVTIVKSYAVFWVGIESA 522
           HK+ AK  D+   S  WT  +D+     F    V++YAV  +G E A
Sbjct: 110 HKIIAKPYDKTLQSTTWTLERDIPTGTYF----VRAYAVDAIGHEVA 152


>At5g06580.1 68418.m00743 FAD linked oxidase family protein similar
           to SP|Q12627 from Kluyveromyces lactis and SP|P32891
           from Saccharomyces cerevisiae; contains Pfam FAD linked
           oxidases, C-terminal domain PF02913, Pfam FAD binding
           domain PF01565
          Length = 567

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -3

Query: 353 LRGCEKV-SSGLTVQVPTILSP*RASRRMPAILSSGVLPL 237
           LR C ++ S+  +    T+LSP +  RR+P   SS + PL
Sbjct: 17  LRPCRQLHSTPKSTGDVTVLSPVKGRRRLPTCWSSSLFPL 56


>At4g04920.1 68417.m00715 expressed protein 
          Length = 1250

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 24/107 (22%), Positives = 42/107 (39%), Gaps = 3/107 (2%)
 Frame = +1

Query: 202 SVKAGHSIDVVISGKTPEDKMAGILLEARQGDKIVGTWTVSPDDTFSQPLNCGEPNNAVT 381
           ++++   I VV+  K  E  + G   +       +    VSP   F   L   +PN+ + 
Sbjct: 43  TIESTDPILVVVEEKLLEKSVDGEKEDDNSSSSNMEIDPVSPATVFCVKLK--QPNSNLL 100

Query: 382 HKMHAKELDRQTVSYPWTAPKD---LEGDVVFKVTIVKSYAVFWVGI 513
           HKM   EL R   +  W    +      +   ++   K+   FW+ I
Sbjct: 101 HKMSVPELCRNFSAVAWCGKLNAIACASETCARIPSSKANTPFWIPI 147


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,716,040
Number of Sequences: 28952
Number of extensions: 334413
Number of successful extensions: 819
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 819
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1275599520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)