Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_F03
         (639 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12932| Best HMM Match : zf-C2H2 (HMM E-Value=0.13)                  30   1.8  
SB_44272| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_3411| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.6  
SB_1759| Best HMM Match : 7tm_1 (HMM E-Value=2.2e-36)                  28   5.6  

>SB_12932| Best HMM Match : zf-C2H2 (HMM E-Value=0.13)
          Length = 577

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -2

Query: 347 PSKGSSLTTADLYHSINIQNSMETALTQRPLRGCRGAV 234
           P K S  T  +  H +   N + TAL++RP++G   AV
Sbjct: 256 PMKASLKTYCNEGHDVAHANDIHTALSERPVKGTTAAV 293


>SB_44272| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1128

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -2

Query: 347 PSKGSSLTTADLYHSINIQNSMETALTQRPLRGCRGAV 234
           P K +  T  +  H +   N M TAL++RP++G   AV
Sbjct: 810 PMKAALKTYCNEGHDMANANDMHTALSERPVKGTTAAV 847


>SB_3411| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 201

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = -2

Query: 407 PNSLTIFKPKMFATSRAAQIPSKGSSLTTADLYHSINIQNSMETALTQRPL 255
           P   T+    MFA SR+   PS  +++      + ++IQ+ +ET L +R L
Sbjct: 100 PQKFTLPFYLMFAVSRSKDDPSTVTAIAKKCRENGVDIQDFLETLLDRRVL 150


>SB_1759| Best HMM Match : 7tm_1 (HMM E-Value=2.2e-36)
          Length = 401

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +1

Query: 268 VSAVSILFCIFILWYRSAVVKLLPLDG 348
           ++   + +CI I+W+ S +  LLP+ G
Sbjct: 139 ITKTHVFYCIAIIWFYSCMTALLPVMG 165


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,644,128
Number of Sequences: 59808
Number of extensions: 403446
Number of successful extensions: 771
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 771
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)