Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_F01
         (524 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|c...    26   3.0  
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    26   3.0  
SPAC3C7.07c |||arginine-tRNA protein transferase |Schizosaccharo...    25   6.9  

>SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 559

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 365 HLWIVGYFYLNNICFIIVYILNI 433
           HL+ +GYFY     F+I + LN+
Sbjct: 497 HLYYIGYFYSFMTAFLIYWGLNL 519


>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1014

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +2

Query: 188  TRSNRDISNSF*GFRNNHSNCN 253
            TR  R  S +F GF +NHSN N
Sbjct: 965  TRPRRLGSRTFQGFNSNHSNIN 986


>SPAC3C7.07c |||arginine-tRNA protein transferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 361

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = +1

Query: 328 PDLCALQMEDVNPPLDSWLFLFE*YMLYYSLYFKHIC 438
           PD+    +  ++   + WL L   Y  YY  Y+ H C
Sbjct: 187 PDMSKFSLGRISACREIWLALECGYRYYYMGYYIHTC 223


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,028,596
Number of Sequences: 5004
Number of extensions: 39774
Number of successful extensions: 92
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)