Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_F01
         (524 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28001| Best HMM Match : Zip (HMM E-Value=3e-18)                     30   1.3  
SB_53276| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_55609| Best HMM Match : ig (HMM E-Value=0.022)                      28   4.1  
SB_9550| Best HMM Match : GPS (HMM E-Value=1.6e-11)                    28   4.1  
SB_1925| Best HMM Match : Tctex-1 (HMM E-Value=8.7e-12)                28   4.1  
SB_54597| Best HMM Match : zf-B_box (HMM E-Value=4e-17)                28   5.4  
SB_22572| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_17743| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_17477| Best HMM Match : PSI (HMM E-Value=1.7)                       28   5.4  
SB_33371| Best HMM Match : SRF-TF (HMM E-Value=2.4e-24)                27   7.2  

>SB_28001| Best HMM Match : Zip (HMM E-Value=3e-18)
          Length = 656

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
 Frame = -1

Query: 386 NSQLSKGGFTSSICSAHKSGSTSTGKIFPSIFFSCCHNT---DTCSRCYSLS 240
           + Q +   FT+ + S      T   KIF  ++F  C +T     C+RC+S S
Sbjct: 27  HGQYTFADFTARLHSRDTLSFTDINKIFEKLYFENCTSTGRKQDCNRCFSPS 78


>SB_53276| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 424

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 17/63 (26%), Positives = 31/63 (49%)
 Frame = +3

Query: 42  CCSLSLTINFCDFVNGSVGGLLSKLRDPLPTVDQAFRIVFRDSSEDTDRRDQTVTSATRS 221
           C S++ +    D +     G L+ L+       + + +VF+DS++ T   D  +T  T S
Sbjct: 107 CTSVATSQTSSDIITAGEDGRLNVLKTGNQNPIRFYDLVFKDSADSTSIND--ITFTTTS 164

Query: 222 EVL 230
           EV+
Sbjct: 165 EVV 167


>SB_55609| Best HMM Match : ig (HMM E-Value=0.022)
          Length = 200

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = -1

Query: 386 NSQLSKGGFTSSICSAHKSGSTS--TGKIFPSIFFSCCHNTDTCSR 255
           NS  S G   +++CS  K+G  S  T     SI+  C  + D  SR
Sbjct: 76  NSISSSGATRNAVCSTAKNGRVSKITKNAGESIYLKCISSQDLASR 121


>SB_9550| Best HMM Match : GPS (HMM E-Value=1.6e-11)
          Length = 1771

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +2

Query: 371 WIVGYFYLNNICFIIVYILNIF 436
           W++G F++N    ++ Y+ NIF
Sbjct: 598 WLLGLFFVNKDSLVMAYLFNIF 619


>SB_1925| Best HMM Match : Tctex-1 (HMM E-Value=8.7e-12)
          Length = 349

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -1

Query: 173 RTIPEDNPESLINCR*RVTKFAK*TTDTPVN 81
           +T+P + PES IN R R TK  K     P N
Sbjct: 50  KTLPAEKPESAINERRRGTKIRKCDEKKPTN 80


>SB_54597| Best HMM Match : zf-B_box (HMM E-Value=4e-17)
          Length = 755

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -1

Query: 287 SCCHNTDTCSRCYSLSGC 234
           SCC   + C+RC +++GC
Sbjct: 658 SCCVTMNGCARCVTMNGC 675


>SB_22572| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 537

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -1

Query: 287 SCCHNTDTCSRCYSLSGC 234
           SCC   + C+RC +++GC
Sbjct: 440 SCCVTMNGCARCVTMNGC 457


>SB_17743| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 260

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -1

Query: 287 SCCHNTDTCSRCYSLSGC 234
           +CC   + CSRC +++GC
Sbjct: 181 ACCVTMNGCSRCVTMNGC 198


>SB_17477| Best HMM Match : PSI (HMM E-Value=1.7)
          Length = 206

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -1

Query: 287 SCCHNTDTCSRCYSLSGC 234
           +CC   + CSRC +++GC
Sbjct: 109 ACCVTMNGCSRCVTMNGC 126


>SB_33371| Best HMM Match : SRF-TF (HMM E-Value=2.4e-24)
          Length = 333

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +1

Query: 334 LCALQMEDVNPPLDSWLFLFE*YMLYYSLYFKHICIRTFAVVESCV 471
           LCAL    V P L +++F    Y    +  + ++C R +A V +CV
Sbjct: 221 LCALAFALVCPLLFTFMFALCVYAHACTCIYAYLCTRIYAYVCACV 266


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,578,426
Number of Sequences: 59808
Number of extensions: 287167
Number of successful extensions: 692
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 692
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1184975377
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)