Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_F01
         (524 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    23   2.5  
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    22   4.4  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    22   4.4  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    22   4.4  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    21   5.8  

>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +1

Query: 346 QMEDVNPPLDSWLFLFE*YMLYYS 417
           Q  D  P L+ WL++    + Y+S
Sbjct: 297 QESDYYPDLNEWLYILSGCLYYFS 320


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +2

Query: 194 SNRDISNSF*GFRNNHSNCNIYYKCQYCD 280
           SN  ISN      NN+ N  +YY   Y +
Sbjct: 86  SNNYISNISNYNNNNNYNKKLYYNINYIE 114


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +2

Query: 194 SNRDISNSF*GFRNNHSNCNIYYKCQYCD 280
           SN+ I N+     NN++N  +YY   Y +
Sbjct: 308 SNKTIHNN--NNYNNYNNKKLYYNINYIE 334


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +2

Query: 194 SNRDISNSF*GFRNNHSNCNIYYKCQYCD 280
           SN  ISN      NN+ N  +YY   Y +
Sbjct: 324 SNNYISNISNYNNNNNYNKKLYYNINYIE 352


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 5/18 (27%), Positives = 11/18 (61%)
 Frame = +2

Query: 227 FRNNHSNCNIYYKCQYCD 280
           F++ H   +  Y C++C+
Sbjct: 25  FQDKHEQSDTLYVCEFCN 42


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,709
Number of Sequences: 438
Number of extensions: 2763
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14722920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)