Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_F01
         (524 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g57060.1 68416.m06353 non-SMC condensin subunit, XCAP-D2/Cnd1...    27   5.8  
At3g13870.2 68416.m01752 root hair defective 3 (RHD3) identical ...    27   5.8  
At3g13870.1 68416.m01753 root hair defective 3 (RHD3) identical ...    27   5.8  
At4g16250.1 68417.m02465 phytochrome D (PHYD) nearly identical t...    27   7.7  

>At3g57060.1 68416.m06353 non-SMC condensin subunit, XCAP-D2/Cnd1
           family protein similar to 13S condensin XCAP-D2 subunit
           [Xenopus laevis] GI:3764087; contains Pfam profile
           PF04594: Non-SMC condensin subunit, XCAP-D2/Cnd1
          Length = 1439

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = -1

Query: 284 CCHNTDTCSRCYSLSGCF*NLRTSC*CHGLISSIRILRTIPEDNPESL 141
           C  + D   R YSL   F +L  SC C+ L+ S+R   ++   N +S+
Sbjct: 58  CVEDQDVFDRVYSLVRSFFSLPPSCKCN-LVESLRSNLSVLLPNVDSI 104


>At3g13870.2 68416.m01752 root hair defective 3 (RHD3) identical to
           root hair defective 3 (RHD3) GI:1839188 from
           [Arabidopsis thaliana] (Genes Dev (1997) 11(6), 799-811)
          Length = 738

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = +3

Query: 75  DFVNGSVGGLLSKLRDPLPTVDQAFRIVFRDSSEDTDRRDQTVTSATRSEV 227
           +F NG + GLLS     +PTV    + +  +        +Q++ S  +SEV
Sbjct: 662 EFQNGVLPGLLSLSTKFIPTVMNLLKKLAEEGQAPPTNSNQSMNSTAQSEV 712


>At3g13870.1 68416.m01753 root hair defective 3 (RHD3) identical to
           root hair defective 3 (RHD3) GI:1839188 from
           [Arabidopsis thaliana] (Genes Dev (1997) 11(6), 799-811)
          Length = 802

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = +3

Query: 75  DFVNGSVGGLLSKLRDPLPTVDQAFRIVFRDSSEDTDRRDQTVTSATRSEV 227
           +F NG + GLLS     +PTV    + +  +        +Q++ S  +SEV
Sbjct: 726 EFQNGVLPGLLSLSTKFIPTVMNLLKKLAEEGQAPPTNSNQSMNSTAQSEV 776


>At4g16250.1 68417.m02465 phytochrome D (PHYD) nearly identical to
            SP|P42497 Phytochrome D {Arabidopsis thaliana}
          Length = 1164

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +3

Query: 57   LTINFCDFVNGSVGGLLSKLRDPLPTVDQAFRIVFRDSSEDTDRRDQ 197
            LT+N    ++G + G    L+ P P + QA  +  R  SE   RR +
Sbjct: 889  LTLNKRVSIDGKIIGAFCFLQIPSPELQQALEVQRRQESEYFSRRKE 935


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,244,653
Number of Sequences: 28952
Number of extensions: 196086
Number of successful extensions: 464
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 464
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 967280384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)