Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_E24
(652 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g41740.1 68415.m05159 villin 2 (VLN2) nearly identical to vil... 200 6e-52
At5g57320.1 68418.m07160 villin, putative similar to villin 2 (V... 196 8e-51
At3g57410.1 68416.m06391 villin 3 (VLN3) nearly identical to vil... 196 1e-50
At4g30160.1 68417.m04289 villin, putative similar to villin 2 (... 192 1e-49
At2g29890.1 68415.m03630 villin 1 (VLN1) nearly identical to vil... 131 4e-31
At4g39060.1 68417.m05532 F-box family protein low similarity to ... 30 1.2
At4g01810.1 68417.m00238 protein transport protein-related relat... 29 3.5
At3g47500.1 68416.m05166 Dof-type zinc finger domain-containing ... 29 3.5
At1g61610.1 68414.m06942 S-locus lectin protein kinase family pr... 29 3.5
At2g37660.1 68415.m04619 expressed protein 28 4.7
At1g66950.1 68414.m07612 ABC transporter family protein similar ... 28 4.7
At5g09450.1 68418.m01094 pentatricopeptide (PPR) repeat-containi... 28 6.2
At1g27320.1 68414.m03328 histidine kinase (AHK3) identical to hi... 27 8.2
>At2g41740.1 68415.m05159 villin 2 (VLN2) nearly identical to villin
2 (VLN2) [Arabidopsis thaliana] GI:3415115
Length = 976
Score = 200 bits (488), Expect = 6e-52
Identities = 99/206 (48%), Positives = 129/206 (62%)
Frame = +2
Query: 23 PAFANAGRQAGVEIWRIQNFEPVAVQSKDFGKFYKGDSYIILKTTSDKRNNLSWDIHYWI 202
PAF AG++ G EIWRI+NFE V V + GKFY GD+YI+L+TT +K +DIH+WI
Sbjct: 8 PAFQGAGQKPGTEIWRIENFEAVPVPKSEHGKFYMGDTYIVLQTTQNKGGAYLFDIHFWI 67
Query: 203 GSETSQDEAGAAAILTVGLDDKFGGAAVQHREAMGHESNHFLQYFTSALQYLDGGNPSGF 382
G +TSQDEAG AA+ TV LD GG AVQHRE GHES+ FL YF + L+GG SGF
Sbjct: 68 GKDTSQDEAGTAAVKTVELDAVLGGRAVQHREIQGHESDKFLSYFKPCIIPLEGGVASGF 127
Query: 383 NHVVTNPGAEKRMFQVKGKRNVRVRQVDPLISSMNKGDCFILDINNDIYVYVGERTKNVE 562
V E R++ KGKR +R++QV SS+N D FILD IY + G + E
Sbjct: 128 K-TVEEEVFETRLYTCKGKRAIRLKQVPFARSSLNHDDVFILDTEEKIYQFNGANSNIQE 186
Query: 563 KLKAISMANQIRDQDHNGRGRVEIID 640
+ KA+ + ++D+ H G V I+D
Sbjct: 187 RAKALEVVQYLKDKYHEGTCDVAIVD 212
Score = 60.9 bits (141), Expect = 7e-10
Identities = 43/191 (22%), Positives = 81/191 (42%), Gaps = 10/191 (5%)
Frame = +2
Query: 56 VEIWRIQNFEPVAVQSKDFGKFYKGDSYIILKTTSDKRNNLSWDIHYWIGSETSQDEAGA 235
+E+W + + +D GK Y GD Y++L T + + W G ++ ++
Sbjct: 392 LEVWYVNGKVKTPLPKEDIGKLYSGDCYLVLYTYHSGERKDEYFLSCWFGKKSIPEDQDT 451
Query: 236 AAILTVGLDDKFGGAAVQHREAMGHESNHFLQYFTSALQYLDGGNPSGFNHVV------- 394
A L + + G VQ R G E F+ F + L GG SG+ +
Sbjct: 452 AIRLANTMSNSLKGRPVQGRIYEGKEPPQFVALF-QPMVVLKGGLSSGYKSSMGESESTD 510
Query: 395 -TNPGAEKRMFQVKGK--RNVRVRQVDPLISSMNKGDCFILDINNDIYVYVGERTKNVEK 565
T + QV G N + QV+ + +S+N +CF+L ++++ G ++ + +
Sbjct: 511 ETYTPESIALVQVSGTGVHNNKAVQVETVATSLNSYECFLLQSGTSMFLWHGNQSTHEQL 570
Query: 566 LKAISMANQIR 598
A +A ++
Sbjct: 571 ELATKVAEFLK 581
Score = 29.1 bits (62), Expect = 2.7
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +2
Query: 476 SSMNKGDCFILDINNDIYVYVGERTKNVEKLKAISMA 586
S + C++LD +IY++VG R V++ KA S +
Sbjct: 272 SMLENTKCYLLDCGAEIYIWVG-RVTQVDERKAASQS 307
>At5g57320.1 68418.m07160 villin, putative similar to villin 2
(VLN2) [Arabidopsis thaliana] GI:3415115, villin 3
(VLN3) [Arabidopsis thaliana] GI:3415117; contains Pfam
profiles PF00626: Gelsolin repeat, PF02209: Villin
headpiece domain
Length = 962
Score = 196 bits (479), Expect = 8e-51
Identities = 91/205 (44%), Positives = 134/205 (65%)
Frame = +2
Query: 26 AFANAGRQAGVEIWRIQNFEPVAVQSKDFGKFYKGDSYIILKTTSDKRNNLSWDIHYWIG 205
A AG+++G+EIWRI+NF+PV V + GKF+ GDSYI+LKTT+ + +L DIHYW+G
Sbjct: 11 ALQGAGQKSGIEIWRIENFKPVTVPQESHGKFFTGDSYIVLKTTASRSGSLHHDIHYWLG 70
Query: 206 SETSQDEAGAAAILTVGLDDKFGGAAVQHREAMGHESNHFLQYFTSALQYLDGGNPSGFN 385
++SQDEAGA A++TV LD GG AVQ+RE GHE+ FL YF + +GG SGFN
Sbjct: 71 KDSSQDEAGAVAVMTVELDSALGGRAVQYREVQGHETEKFLSYFKPCIIPQEGGVASGFN 130
Query: 386 HVVTNPGAEKRMFQVKGKRNVRVRQVDPLISSMNKGDCFILDINNDIYVYVGERTKNVEK 565
HV + R++ KGK VRV++V + S++N D FILD + I+ + G ++ E+
Sbjct: 131 HVKPEE-HQTRLYICKGKHVVRVKEVPFVRSTLNHEDVFILDTESKIFQFSGSKSSIQER 189
Query: 566 LKAISMANQIRDQDHNGRGRVEIID 640
KA+ + I+D H+G+ + ++
Sbjct: 190 AKALEVVQYIKDTYHDGKCDIAAVE 214
Score = 52.0 bits (119), Expect = 3e-07
Identities = 38/181 (20%), Positives = 83/181 (45%), Gaps = 11/181 (6%)
Frame = +2
Query: 56 VEIWRIQNFEPVAVQSKDFGKFYKGDSYIILKT--TSDKRNNLSWDIHYWIGSETSQDEA 229
+++WRI E + +++ + KFY GD YI+ + D+ +L + W G ++ +++
Sbjct: 396 LQVWRINCEEKILLEAAEQSKFYSGDCYILQYSYPGEDREEHL---VGTWFGKQSVEEDR 452
Query: 230 GAAAILTVGLDDKFGGAAVQHREAMGHESNHFLQYFTSALQYLDGGNPSGFNHVVTNP-- 403
+A L + + Q R G E F S + + G + + ++ N
Sbjct: 453 ASAISLANKMVESMKFVPAQARINEGKEPIQFFVIMQSFITFKGGVSDAFKKYIAENDIP 512
Query: 404 ----GAE-KRMFQVKGK--RNVRVRQVDPLISSMNKGDCFILDINNDIYVYVGERTKNVE 562
AE +F+V+G N++ Q++ + +N C+IL ++ ++ + G T + +
Sbjct: 513 DTTYEAEGVALFRVQGSGPENMQAIQIEAASAGLNSSHCYILHGDSTVFTWCGNLTSSED 572
Query: 563 K 565
+
Sbjct: 573 Q 573
Score = 28.7 bits (61), Expect = 3.5
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = +2
Query: 494 DCFILDINNDIYVYVGERTKNVEKLKAISMANQIRDQD 607
D FILD + +++V+VG++ +K +A+ + D
Sbjct: 653 DIFILDCHTEVFVWVGQQVDPKKKPQALDIGENFLKHD 690
>At3g57410.1 68416.m06391 villin 3 (VLN3) nearly identical to villin
3 (VLN3) [Arabidopsis thaliana] GI:3415117
Length = 965
Score = 196 bits (477), Expect = 1e-50
Identities = 97/206 (47%), Positives = 127/206 (61%)
Frame = +2
Query: 23 PAFANAGRQAGVEIWRIQNFEPVAVQSKDFGKFYKGDSYIILKTTSDKRNNLSWDIHYWI 202
PAF G++ G EIWRI+NFEPV V + GKFY GD+YI+L+TT +K +DIH+WI
Sbjct: 10 PAFQGVGQKPGTEIWRIENFEPVPVPKSEHGKFYMGDTYIVLQTTQNKGGAYLFDIHFWI 69
Query: 203 GSETSQDEAGAAAILTVGLDDKFGGAAVQHREAMGHESNHFLQYFTSALQYLDGGNPSGF 382
G +TSQDEAG AA+ TV LD GG AVQ+RE GHES+ FL YF + L+GG SGF
Sbjct: 70 GKDTSQDEAGTAAVKTVELDAALGGRAVQYREIQGHESDKFLSYFKPCIIPLEGGVASGF 129
Query: 383 NHVVTNPGAEKRMFQVKGKRNVRVRQVDPLISSMNKGDCFILDINNDIYVYVGERTKNVE 562
E R++ KGKR V ++QV SS+N D FILD IY + G + E
Sbjct: 130 KK-PEEEEFETRLYTCKGKRAVHLKQVPFARSSLNHDDVFILDTKEKIYQFNGANSNIQE 188
Query: 563 KLKAISMANQIRDQDHNGRGRVEIID 640
+ KA+ + ++D+ H G V I+D
Sbjct: 189 RAKALVVIQYLKDKFHEGTSDVAIVD 214
Score = 72.9 bits (171), Expect = 2e-13
Identities = 47/191 (24%), Positives = 84/191 (43%), Gaps = 10/191 (5%)
Frame = +2
Query: 56 VEIWRIQNFEPVAVQSKDFGKFYKGDSYIILKTTSDKRNNLSWDIHYWIGSETSQDEAGA 235
+E+W I + GK Y GD Y++L T + + W G ++Q++
Sbjct: 394 LEVWYIDANSKTVLSKDHVGKLYSGDCYLVLYTYHSGERKEDYFLCCWFGKNSNQEDQET 453
Query: 236 AAILTVGLDDKFGGAAVQHREAMGHESNHFLQYFTSALQYLDGGNPSGFNHVVTNPGAEK 415
A L + + G VQ R G E F+ F + L GG SG+ + +T G+
Sbjct: 454 AVRLASTMTNSLKGRPVQARIFEGKEPPQFVALF-QHMVVLKGGLSSGYKNSMTEKGSSG 512
Query: 416 R--------MFQVKGK--RNVRVRQVDPLISSMNKGDCFILDINNDIYVYVGERTKNVEK 565
+ QV G N + QV+ + +S+N DCF+L ++++VG + + ++
Sbjct: 513 ETYTPESIALIQVSGTGVHNNKALQVEAVATSLNSYDCFLLQSGTSMFLWVGNHSTHEQQ 572
Query: 566 LKAISMANQIR 598
A +A ++
Sbjct: 573 ELAAKVAEFLK 583
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +2
Query: 476 SSMNKGDCFILDINNDIYVYVGERTKNVEKLKAISMA 586
S + C++LD ++I+++VG T+ E+ AI A
Sbjct: 274 SMLENNKCYLLDCGSEIFIWVGRVTQVEERKTAIQAA 310
>At4g30160.1 68417.m04289 villin, putative similar to villin 2
(VLN2) [Arabidopsis thaliana] GI:3415115, villin 3
(VLN3) [Arabidopsis thaliana] GI:3415117; contains Pfam
profiles PF00626: Gelsolin repeat, PF02209: Villin
headpiece domain
Length = 974
Score = 192 bits (469), Expect = 1e-49
Identities = 94/206 (45%), Positives = 126/206 (61%)
Frame = +2
Query: 23 PAFANAGRQAGVEIWRIQNFEPVAVQSKDFGKFYKGDSYIILKTTSDKRNNLSWDIHYWI 202
PAF AG++AG+EIWRI+NF P + GKF+ GDSYI+LKTT+ K L DIHYW+
Sbjct: 10 PAFQGAGQKAGIEIWRIENFIPTPIPKSSIGKFFTGDSYIVLKTTALKTGALRHDIHYWL 69
Query: 203 GSETSQDEAGAAAILTVGLDDKFGGAAVQHREAMGHESNHFLQYFTSALQYLDGGNPSGF 382
G +TSQDEAG AA+ TV LD GG AVQ+RE GHE+ FL YF + +GG SGF
Sbjct: 70 GKDTSQDEAGTAAVKTVELDAALGGRAVQYREVQGHETEKFLSYFKPCIIPQEGGVASGF 129
Query: 383 NHVVTNPGAEKRMFQVKGKRNVRVRQVDPLISSMNKGDCFILDINNDIYVYVGERTKNVE 562
HVV R+F +GK V V++V SS+N D +ILD + I+ + G + E
Sbjct: 130 KHVVAEEHI-TRLFVCRGKHVVHVKEVPFARSSLNHDDIYILDTKSKIFQFNGSNSSIQE 188
Query: 563 KLKAISMANQIRDQDHNGRGRVEIID 640
+ KA+ + I+D H+G V ++
Sbjct: 189 RAKALEVVQYIKDTYHDGTCEVATVE 214
Score = 57.6 bits (133), Expect = 7e-09
Identities = 38/172 (22%), Positives = 75/172 (43%), Gaps = 10/172 (5%)
Frame = +2
Query: 56 VEIWRIQNFEPVAVQSKDFGKFYKGDSYIILKTTSDKRNNLSWDIHYWIGSETSQDEAGA 235
+++WR+ +Q+ D KFY GD Y+ + + I W G ++ ++E G+
Sbjct: 394 LQVWRVNGQAKTLLQAADHSKFYSGDCYVFQYSYPGEEKE-EVLIGTWFGKQSVEEERGS 452
Query: 236 AAILTVGLDDKFGGAAVQHREAMGHESNHFLQYFTSALQYLDGGNPSGFNHVVTNPGAEK 415
A + + + Q R G E F S + + GG SG+ + +
Sbjct: 453 AVSMASKMVESMKFVPAQARIYEGKEPIQFFVIMQSFIVF-KGGISSGYKKYIAEKEVDD 511
Query: 416 --------RMFQVKGK--RNVRVRQVDPLISSMNKGDCFILDINNDIYVYVG 541
+F+++G N++ QVDP+ +S+N +IL ++ ++ + G
Sbjct: 512 DTYNENGVALFRIQGSGPENMQAIQVDPVAASLNSSYYYILHNDSSVFTWAG 563
Score = 31.1 bits (67), Expect = 0.66
Identities = 12/38 (31%), Positives = 25/38 (65%)
Frame = +2
Query: 494 DCFILDINNDIYVYVGERTKNVEKLKAISMANQIRDQD 607
D FI+D +++I+V+VG+ KL A+++ + ++D
Sbjct: 651 DIFIIDCHSEIFVWVGQEVVPKNKLLALTIGEKFIEKD 688
>At2g29890.1 68415.m03630 villin 1 (VLN1) nearly identical to villin
1 (VLN1) [Arabidopsis thaliana] GI:3415113
Length = 909
Score = 131 bits (316), Expect = 4e-31
Identities = 66/213 (30%), Positives = 114/213 (53%)
Frame = +2
Query: 2 RTKARVHPAFANAGRQAGVEIWRIQNFEPVAVQSKDFGKFYKGDSYIILKTTSDKRNNLS 181
R + AF G ++G+EIW + N + +++ FGKF+ G++Y++L+T K +
Sbjct: 3 RLSKDIDSAFQGVGTKSGLEIWCVYNKQLISIPKSSFGKFHSGNAYLVLRTFLRKIESPQ 62
Query: 182 WDIHYWIGSETSQDEAGAAAILTVGLDDKFGGAAVQHREAMGHESNHFLQYFTSALQYLD 361
+DIHYW+G + ++ ++ A+ + LD G VQ+RE G E+ FL YF + ++
Sbjct: 63 YDIHYWLGIDANEVDSILASDKALDLDAALGCCTVQYREVQGQETEKFLSYFKPCIIPVE 122
Query: 362 GGNPSGFNHVVTNPGAEKRMFQVKGKRNVRVRQVDPLISSMNKGDCFILDINNDIYVYVG 541
G + + + + KG VRV++V L SS+N D FILD + ++++ G
Sbjct: 123 GKYSPKTG--IAGETYQVTLLRCKGDHVVRVKEVPFLRSSLNHDDVFILDTASKVFLFAG 180
Query: 542 ERTKNVEKLKAISMANQIRDQDHNGRGRVEIID 640
+ EK KA+ + I+D H+GR V I+
Sbjct: 181 CNSSTQEKAKAMEVVEYIKDNKHDGRCEVATIE 213
Score = 42.3 bits (95), Expect = 3e-04
Identities = 42/185 (22%), Positives = 78/185 (42%), Gaps = 11/185 (5%)
Frame = +2
Query: 23 PAFANAGRQAGVEIWRIQNFEPVAVQSKDFGKFYKGDSYII-LKTTSDKRNNLSWDIHYW 199
P + N + +++WR+ + + D K + GD Y++ K T +R ++ W
Sbjct: 382 PLYTNC--RDNLKVWRVDGDDVSLLSIPDQTKLFTGDCYLVQYKYTYKERTEHL--LYVW 437
Query: 200 IGSETSQDEAGAAAILTVGLDDKFGGAAVQHREAMGHESNHFLQYFTSALQYLDGGNPSG 379
IG E+ Q + A + G +V G+E + F F S L GG
Sbjct: 438 IGCESIQQDRADAITNASAIVGTTKGESVLCHIYQGNEPSRFFPMFQS-LVVFKGGLSRR 496
Query: 380 FNHVVTNP---GAE-----KRMFQVKG--KRNVRVRQVDPLISSMNKGDCFILDINNDIY 529
+ ++ G E +F+V G RN++ QV+ + +S+N +IL +
Sbjct: 497 YKVLLAEKEKIGEEYNENKASLFRVVGTSPRNMQAIQVNLVATSLNSSYSYILQYGASAF 556
Query: 530 VYVGE 544
++G+
Sbjct: 557 TWIGK 561
Score = 29.1 bits (62), Expect = 2.7
Identities = 10/38 (26%), Positives = 23/38 (60%)
Frame = +2
Query: 494 DCFILDINNDIYVYVGERTKNVEKLKAISMANQIRDQD 607
D F+LD +++YV++G + K +A+++ + + D
Sbjct: 648 DVFLLDCQSEVYVWIGSNSNIKSKEEALTLGLKFLEMD 685
>At4g39060.1 68417.m05532 F-box family protein low similarity to
SKP1 interacting partner 6 [Arabidopsis thaliana]
GI:10716957; contains Pfam profile PF00646: F-box domain
Length = 375
Score = 30.3 bits (65), Expect = 1.2
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = -2
Query: 405 PGFVTTWLKPDGLPPSKYCSADVKYCRKWLLSWPIASRCCTAAPPNL 265
P + + W+KPD ++YC+ K R L+ P+ S T PPNL
Sbjct: 64 PIWFSLWIKPDDQTLNQYCNIQEKSTRNLLV--PVPS-SYTPFPPNL 107
>At4g01810.1 68417.m00238 protein transport protein-related related
to Sec23 protein [Homo sapiens] gi|1296664|emb|CAA65774
Length = 880
Score = 28.7 bits (61), Expect = 3.5
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = +2
Query: 86 PVAVQSKDFGKFYKGDSYIILKTTSDKRNNLSW--DIHYWIGSETSQDEAGAAAIL 247
P + ++ G F + +Y L SDK L D+ W+G+E S DE +AA+L
Sbjct: 733 PRCLMHQEGGTFEELPAYD-LSMQSDKAVILDHGTDVFIWLGAELSADEVKSAAVL 787
>At3g47500.1 68416.m05166 Dof-type zinc finger domain-containing
protein identical to H-protein promoter binding
factor-2a GI:3386546 from [Arabidopsis thaliana]
Length = 448
Score = 28.7 bits (61), Expect = 3.5
Identities = 18/61 (29%), Positives = 21/61 (34%)
Frame = -2
Query: 435 PLTWNIRFSAPGFVTTWLKPDGLPPSKYCSADVKYCRKWLLSWPIASRCCTAAPPNLSSR 256
P TWN PGF P G P Y + S PI+ +C P L
Sbjct: 296 PYTWNPAMPPPGF----YPPPGYPMPFYPYWTIPMLPPHQSSSPISQKCSNTNSPTLGKH 351
Query: 255 P 253
P
Sbjct: 352 P 352
>At1g61610.1 68414.m06942 S-locus lectin protein kinase family
protein similar to KI domain interacting kinase 1 [Zea
mays] gi|2735017|gb|AAB93834; contains S-locus
glycoprotein family domain, Pfam:PF00954
Length = 842
Score = 28.7 bits (61), Expect = 3.5
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Frame = +2
Query: 440 RNVRVRQVDPLISSMNKGDCFILDINNDIYVYVGERTKNVEKLKAISMANQIRD-QDHNG 616
RN +R+ D LIS + N YVG KN+E + +AN+ + DH G
Sbjct: 34 RNHTIREGDSLISEDESFELGFFTPKNSTLRYVGIWYKNIEPQTVVWVANREKPLLDHKG 93
>At2g37660.1 68415.m04619 expressed protein
Length = 325
Score = 28.3 bits (60), Expect = 4.7
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Frame = +2
Query: 197 WIGSETSQDEAGAAAILTVGLDDKFGGAAVQH-REAMGHESNHFLQYFTSALQYL-DGGN 370
WIG + D A AA + + L GG + H ++G+ + L + A QYL D G
Sbjct: 182 WIGQKNQIDAAKAAGVKQIVLVGSMGGTNINHPLNSIGNA--NILVWKRKAEQYLADSGI 239
Query: 371 P 373
P
Sbjct: 240 P 240
>At1g66950.1 68414.m07612 ABC transporter family protein similar to
PDR5-like ABC transporter GI:1514643 from [Spirodela
polyrhiza]
Length = 1454
Score = 28.3 bits (60), Expect = 4.7
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Frame = +2
Query: 275 GAAVQHREAMGHESNHFLQYFTS---ALQYLDGGNPSGFNHVVTNPGAEKRM 421
G V + ++GH S ++YF + + DG NP+ + VT P E +M
Sbjct: 1081 GGQVIYAGSLGHHSQKLVEYFEAVEGVPKINDGYNPATWMLDVTTPSMESQM 1132
>At5g09450.1 68418.m01094 pentatricopeptide (PPR) repeat-containing
protein low similiarity to DNA-binding protein [Triticum
aestivum] GI:6958202; contains Pfam profile: PF01535 PPR
repeat
Length = 409
Score = 27.9 bits (59), Expect = 6.2
Identities = 10/33 (30%), Positives = 22/33 (66%)
Frame = -3
Query: 158 MSSLELYRNLLCRTSQSLSIGLRLVQNSESAKF 60
M++ L+ +L CR + + +G ++N+ES++F
Sbjct: 1 MATRSLFHSLRCRLTNNGVLGSNFIRNAESSRF 33
>At1g27320.1 68414.m03328 histidine kinase (AHK3) identical to
histidine kinase AHK3 [Arabidopsis thaliana]
gi|13537198|dbj|BAB40775
Length = 1036
Score = 27.5 bits (58), Expect = 8.2
Identities = 21/72 (29%), Positives = 32/72 (44%)
Frame = +2
Query: 365 GNPSGFNHVVTNPGAEKRMFQVKGKRNVRVRQVDPLISSMNKGDCFILDINNDIYVYVGE 544
G+P F ++TN F KG V V VD L S++ G+ + + V +
Sbjct: 562 GDPGRFRQILTNLMGNSIKFTEKGHIFVTVHLVDELFESID-GETASSPESTLSGLPVAD 620
Query: 545 RTKNVEKLKAIS 580
R ++ E KA S
Sbjct: 621 RQRSWENFKAFS 632
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,936,526
Number of Sequences: 28952
Number of extensions: 329297
Number of successful extensions: 968
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 958
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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