BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= I10A02NGRL0005_E23 (483 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 11_01_0613 + 4904869-4905126,4905389-4906138,4907708-4907767 29 1.5 11_05_0091 - 18982390-18982948,18983088-18983173 29 2.0 02_04_0463 + 23135732-23136888,23138956-23139333,23139506-23139530 29 2.6 02_02_0099 + 6768115-6768285,6769950-6770034,6770501-6770628,677... 29 2.6 04_01_0162 + 1845295-1846317,1846430-1846565,1848436-1848626,184... 28 3.4 10_08_0554 - 18728485-18728676,18728778-18728859,18729083-187291... 28 4.5 10_01_0126 + 1511963-1512052,1513440-1513785,1513884-1515010 28 4.5 09_06_0280 + 22010270-22011407,22011890-22013097 28 4.5 11_06_0013 - 19252779-19252805,19252947-19253090,19253572-192536... 27 6.0 04_01_0344 + 4517730-4517918,4518212-4518359,4518454-4518569,451... 27 6.0 12_01_0222 - 1675077-1675289,1675476-1675553,1675943-1676002,167... 27 7.9 09_04_0032 - 13953323-13955269 27 7.9 >11_01_0613 + 4904869-4905126,4905389-4906138,4907708-4907767 Length = 355 Score = 29.5 bits (63), Expect = 1.5 Identities = 10/15 (66%), Positives = 12/15 (80%) Frame = +2 Query: 230 LNPRTKPAPPRSRSW 274 LNPR PAPP +R+W Sbjct: 77 LNPRATPAPPSARTW 91 >11_05_0091 - 18982390-18982948,18983088-18983173 Length = 214 Score = 29.1 bits (62), Expect = 2.0 Identities = 12/35 (34%), Positives = 18/35 (51%) Frame = +2 Query: 227 NLNPRTKPAPPRSRSWSCC*PGKPRGNSCISSTTP 331 +L P P+P + CC G+ NS ++S TP Sbjct: 130 SLQPSPSPSPTPDSATPCCLTGRLADNSTLNSDTP 164 >02_04_0463 + 23135732-23136888,23138956-23139333,23139506-23139530 Length = 519 Score = 28.7 bits (61), Expect = 2.6 Identities = 20/52 (38%), Positives = 27/52 (51%) Frame = +1 Query: 85 RRITRQALAEAKAIKEQINILVYVAEMVATDPVLAWTKAKELYSSLSQPEPE 240 RRI R E K +KEQIN+L ++ T+ ++ K L LSQ E E Sbjct: 382 RRIDRPETNEEKDLKEQINLL--RVDLKETEANISDEDKKGLSEKLSQMERE 431 >02_02_0099 + 6768115-6768285,6769950-6770034,6770501-6770628, 6771429-6771465,6773108-6774193,6774337-6774447, 6774701-6774817,6774818-6775120,6776092-6776513, 6776645-6777274 Length = 1029 Score = 28.7 bits (61), Expect = 2.6 Identities = 18/42 (42%), Positives = 21/42 (50%) Frame = -1 Query: 402 VGCKRHVLGNKRQALAYVSRQVRVGVVDEMHEFPRGFPGQQH 277 VG HVLG Q A +R+ V+DE E RGF Q H Sbjct: 782 VGTPCHVLG-MLQGRALCPDHIRMFVLDEADEVLRGFKDQIH 822 >04_01_0162 + 1845295-1846317,1846430-1846565,1848436-1848626, 1848780-1848887,1849001-1849204,1849294-1849525, 1849602-1849751,1849830-1850007,1850416-1850519, 1850611-1850933,1851274-1851459,1851672-1851899 Length = 1020 Score = 28.3 bits (60), Expect = 3.4 Identities = 13/34 (38%), Positives = 20/34 (58%) Frame = +1 Query: 16 GETGRAKAAQAVQHGARLKRKLQRRITRQALAEA 117 G+ + QAV HG +LK +L R +TR+ E+ Sbjct: 640 GQVYHYPSFQAVTHGDKLKHELSRDLTRETAWES 673 >10_08_0554 - 18728485-18728676,18728778-18728859,18729083-18729170, 18729286-18729327,18729747-18729858 Length = 171 Score = 27.9 bits (59), Expect = 4.5 Identities = 13/28 (46%), Positives = 16/28 (57%) Frame = +1 Query: 388 SFAADSLLKTVPVETAMVEIKGWKENSK 471 S D+LL TV E + IK W+EN K Sbjct: 48 SHERDALLTTVATEKRISLIKAWEENEK 75 >10_01_0126 + 1511963-1512052,1513440-1513785,1513884-1515010 Length = 520 Score = 27.9 bits (59), Expect = 4.5 Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 1/48 (2%) Frame = -1 Query: 441 DHSSFHGYRLEKRVGCKRHVLGNKRQALAYVSRQ-VRVGVVDEMHEFP 301 DH S HG++ K GC+ ++G + + + V+ + + + E HE P Sbjct: 67 DHHSKHGHKKRKHSGCE--IVGEETRKVCNVTMEHLEKSSLSEEHEAP 112 >09_06_0280 + 22010270-22011407,22011890-22013097 Length = 781 Score = 27.9 bits (59), Expect = 4.5 Identities = 10/31 (32%), Positives = 18/31 (58%) Frame = +2 Query: 263 SRSWSCC*PGKPRGNSCISSTTPTRTCLETY 355 + +WSC PG+ R ++CIS+ + + Y Sbjct: 279 ANNWSCPTPGEARRSACISNNSYCHNVTDNY 309 >11_06_0013 - 19252779-19252805,19252947-19253090,19253572-19253663, 19253757-19253835,19253965-19254031,19254163-19254254, 19254986-19255102,19255254-19255365,19255479-19255594, 19255680-19255756,19255912-19255993,19256077-19256214, 19258806-19259009 Length = 448 Score = 27.5 bits (58), Expect = 6.0 Identities = 16/38 (42%), Positives = 19/38 (50%) Frame = +2 Query: 233 NPRTKPAPPRSRSWSCC*PGKPRGNSCISSTTPTRTCL 346 +PR P PP + SW C P P G +SS TCL Sbjct: 288 SPRNGPLPPNAPSW-CEAPFDPEG--LLSSLMAIVTCL 322 >04_01_0344 + 4517730-4517918,4518212-4518359,4518454-4518569, 4518917-4518979,4519084-4519152,4519317-4519352 Length = 206 Score = 27.5 bits (58), Expect = 6.0 Identities = 17/53 (32%), Positives = 23/53 (43%) Frame = +2 Query: 188 LGQKPRSYTRL*ANLNPRTKPAPPRSRSWSCC*PGKPRGNSCISSTTPTRTCL 346 +G K Y+ + + TKP +R WS C RGN S+ TR L Sbjct: 105 MGDKDMDYSSI--EYHKPTKPRVRHTRPWSSCIKSSNRGNFHPSTKLRTRVNL 155 >12_01_0222 - 1675077-1675289,1675476-1675553,1675943-1676002, 1676103-1676206,1676321-1676479,1676768-1676894, 1677569-1677736,1677890-1678000,1678090-1678243, 1678409-1678744,1678854-1679038,1679141-1679239, 1679376-1679639,1679776-1679952,1680351-1680644, 1680753-1680920,1681574-1681918,1682002-1682171, 1682272-1682422,1683296-1683365,1683456-1683640, 1683999-1684092,1684195-1684313,1684658-1684717, 1684844-1684930,1685631-1685717,1685905-1686013, 1686105-1686183,1686350-1686437,1686611-1686675, 1687570-1687722,1688514-1688620,1688702-1688784, 1688926-1689016,1689095-1689231,1689612-1689701, 1689795-1689962,1690366-1690560 Length = 1809 Score = 27.1 bits (57), Expect = 7.9 Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 1/73 (1%) Frame = +1 Query: 13 EGETGRAKAAQAVQHGARLKRKLQRRITRQALAE-AKAIKEQINILVYVAEMVATDPVLA 189 E + A AA A Q A + L R +TR ALAE A+ +L Y +A+ Sbjct: 3 ETSSPAAAAAAAAQTDAEREEALDRMLTRLALAEDARLAPLLARVLPYAITSLASPAASV 62 Query: 190 WTKAKELYSSLSQ 228 E+ S +++ Sbjct: 63 RKLVMEILSHINK 75 >09_04_0032 - 13953323-13955269 Length = 648 Score = 27.1 bits (57), Expect = 7.9 Identities = 10/23 (43%), Positives = 15/23 (65%) Frame = -3 Query: 319 RDARISSRFPWSATRPTPRAWRG 251 RDA + R PW+++ +P WRG Sbjct: 40 RDA-VGPRLPWASSSSSPCGWRG 61 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.315 0.128 0.354 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 13,537,103 Number of Sequences: 37544 Number of extensions: 287777 Number of successful extensions: 991 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 975 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 991 length of database: 14,793,348 effective HSP length: 77 effective length of database: 11,902,460 effective search space used: 987904180 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.6 bits)
- SilkBase 1999-2023 -