Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_E23
(483 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0613 + 4904869-4905126,4905389-4906138,4907708-4907767 29 1.5
11_05_0091 - 18982390-18982948,18983088-18983173 29 2.0
02_04_0463 + 23135732-23136888,23138956-23139333,23139506-23139530 29 2.6
02_02_0099 + 6768115-6768285,6769950-6770034,6770501-6770628,677... 29 2.6
04_01_0162 + 1845295-1846317,1846430-1846565,1848436-1848626,184... 28 3.4
10_08_0554 - 18728485-18728676,18728778-18728859,18729083-187291... 28 4.5
10_01_0126 + 1511963-1512052,1513440-1513785,1513884-1515010 28 4.5
09_06_0280 + 22010270-22011407,22011890-22013097 28 4.5
11_06_0013 - 19252779-19252805,19252947-19253090,19253572-192536... 27 6.0
04_01_0344 + 4517730-4517918,4518212-4518359,4518454-4518569,451... 27 6.0
12_01_0222 - 1675077-1675289,1675476-1675553,1675943-1676002,167... 27 7.9
09_04_0032 - 13953323-13955269 27 7.9
>11_01_0613 + 4904869-4905126,4905389-4906138,4907708-4907767
Length = 355
Score = 29.5 bits (63), Expect = 1.5
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +2
Query: 230 LNPRTKPAPPRSRSW 274
LNPR PAPP +R+W
Sbjct: 77 LNPRATPAPPSARTW 91
>11_05_0091 - 18982390-18982948,18983088-18983173
Length = 214
Score = 29.1 bits (62), Expect = 2.0
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +2
Query: 227 NLNPRTKPAPPRSRSWSCC*PGKPRGNSCISSTTP 331
+L P P+P + CC G+ NS ++S TP
Sbjct: 130 SLQPSPSPSPTPDSATPCCLTGRLADNSTLNSDTP 164
>02_04_0463 + 23135732-23136888,23138956-23139333,23139506-23139530
Length = 519
Score = 28.7 bits (61), Expect = 2.6
Identities = 20/52 (38%), Positives = 27/52 (51%)
Frame = +1
Query: 85 RRITRQALAEAKAIKEQINILVYVAEMVATDPVLAWTKAKELYSSLSQPEPE 240
RRI R E K +KEQIN+L ++ T+ ++ K L LSQ E E
Sbjct: 382 RRIDRPETNEEKDLKEQINLL--RVDLKETEANISDEDKKGLSEKLSQMERE 431
>02_02_0099 +
6768115-6768285,6769950-6770034,6770501-6770628,
6771429-6771465,6773108-6774193,6774337-6774447,
6774701-6774817,6774818-6775120,6776092-6776513,
6776645-6777274
Length = 1029
Score = 28.7 bits (61), Expect = 2.6
Identities = 18/42 (42%), Positives = 21/42 (50%)
Frame = -1
Query: 402 VGCKRHVLGNKRQALAYVSRQVRVGVVDEMHEFPRGFPGQQH 277
VG HVLG Q A +R+ V+DE E RGF Q H
Sbjct: 782 VGTPCHVLG-MLQGRALCPDHIRMFVLDEADEVLRGFKDQIH 822
>04_01_0162 +
1845295-1846317,1846430-1846565,1848436-1848626,
1848780-1848887,1849001-1849204,1849294-1849525,
1849602-1849751,1849830-1850007,1850416-1850519,
1850611-1850933,1851274-1851459,1851672-1851899
Length = 1020
Score = 28.3 bits (60), Expect = 3.4
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +1
Query: 16 GETGRAKAAQAVQHGARLKRKLQRRITRQALAEA 117
G+ + QAV HG +LK +L R +TR+ E+
Sbjct: 640 GQVYHYPSFQAVTHGDKLKHELSRDLTRETAWES 673
>10_08_0554 -
18728485-18728676,18728778-18728859,18729083-18729170,
18729286-18729327,18729747-18729858
Length = 171
Score = 27.9 bits (59), Expect = 4.5
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 388 SFAADSLLKTVPVETAMVEIKGWKENSK 471
S D+LL TV E + IK W+EN K
Sbjct: 48 SHERDALLTTVATEKRISLIKAWEENEK 75
>10_01_0126 + 1511963-1512052,1513440-1513785,1513884-1515010
Length = 520
Score = 27.9 bits (59), Expect = 4.5
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = -1
Query: 441 DHSSFHGYRLEKRVGCKRHVLGNKRQALAYVSRQ-VRVGVVDEMHEFP 301
DH S HG++ K GC+ ++G + + + V+ + + + E HE P
Sbjct: 67 DHHSKHGHKKRKHSGCE--IVGEETRKVCNVTMEHLEKSSLSEEHEAP 112
>09_06_0280 + 22010270-22011407,22011890-22013097
Length = 781
Score = 27.9 bits (59), Expect = 4.5
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +2
Query: 263 SRSWSCC*PGKPRGNSCISSTTPTRTCLETY 355
+ +WSC PG+ R ++CIS+ + + Y
Sbjct: 279 ANNWSCPTPGEARRSACISNNSYCHNVTDNY 309
>11_06_0013 -
19252779-19252805,19252947-19253090,19253572-19253663,
19253757-19253835,19253965-19254031,19254163-19254254,
19254986-19255102,19255254-19255365,19255479-19255594,
19255680-19255756,19255912-19255993,19256077-19256214,
19258806-19259009
Length = 448
Score = 27.5 bits (58), Expect = 6.0
Identities = 16/38 (42%), Positives = 19/38 (50%)
Frame = +2
Query: 233 NPRTKPAPPRSRSWSCC*PGKPRGNSCISSTTPTRTCL 346
+PR P PP + SW C P P G +SS TCL
Sbjct: 288 SPRNGPLPPNAPSW-CEAPFDPEG--LLSSLMAIVTCL 322
>04_01_0344 +
4517730-4517918,4518212-4518359,4518454-4518569,
4518917-4518979,4519084-4519152,4519317-4519352
Length = 206
Score = 27.5 bits (58), Expect = 6.0
Identities = 17/53 (32%), Positives = 23/53 (43%)
Frame = +2
Query: 188 LGQKPRSYTRL*ANLNPRTKPAPPRSRSWSCC*PGKPRGNSCISSTTPTRTCL 346
+G K Y+ + + TKP +R WS C RGN S+ TR L
Sbjct: 105 MGDKDMDYSSI--EYHKPTKPRVRHTRPWSSCIKSSNRGNFHPSTKLRTRVNL 155
>12_01_0222 -
1675077-1675289,1675476-1675553,1675943-1676002,
1676103-1676206,1676321-1676479,1676768-1676894,
1677569-1677736,1677890-1678000,1678090-1678243,
1678409-1678744,1678854-1679038,1679141-1679239,
1679376-1679639,1679776-1679952,1680351-1680644,
1680753-1680920,1681574-1681918,1682002-1682171,
1682272-1682422,1683296-1683365,1683456-1683640,
1683999-1684092,1684195-1684313,1684658-1684717,
1684844-1684930,1685631-1685717,1685905-1686013,
1686105-1686183,1686350-1686437,1686611-1686675,
1687570-1687722,1688514-1688620,1688702-1688784,
1688926-1689016,1689095-1689231,1689612-1689701,
1689795-1689962,1690366-1690560
Length = 1809
Score = 27.1 bits (57), Expect = 7.9
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Frame = +1
Query: 13 EGETGRAKAAQAVQHGARLKRKLQRRITRQALAE-AKAIKEQINILVYVAEMVATDPVLA 189
E + A AA A Q A + L R +TR ALAE A+ +L Y +A+
Sbjct: 3 ETSSPAAAAAAAAQTDAEREEALDRMLTRLALAEDARLAPLLARVLPYAITSLASPAASV 62
Query: 190 WTKAKELYSSLSQ 228
E+ S +++
Sbjct: 63 RKLVMEILSHINK 75
>09_04_0032 - 13953323-13955269
Length = 648
Score = 27.1 bits (57), Expect = 7.9
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -3
Query: 319 RDARISSRFPWSATRPTPRAWRG 251
RDA + R PW+++ +P WRG
Sbjct: 40 RDA-VGPRLPWASSSSSPCGWRG 61
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.315 0.128 0.354
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,537,103
Number of Sequences: 37544
Number of extensions: 287777
Number of successful extensions: 991
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 975
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 991
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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