Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_E23
         (483 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23525-5|AAC46568.1|  465|Caenorhabditis elegans Yeast smf (diva...    30   1.0  
Z54218-1|CAA90954.1|  315|Caenorhabditis elegans Hypothetical pr...    29   2.3  
U88177-3|AAB42292.1|  191|Caenorhabditis elegans Hypothetical pr...    27   5.4  
AF003151-19|AAK18922.1|  988|Caenorhabditis elegans Hypothetical...    27   7.1  

>U23525-5|AAC46568.1|  465|Caenorhabditis elegans Yeast smf
           (divalent cation transporter)homolog protein 2 protein.
          Length = 465

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 18/46 (39%), Positives = 22/46 (47%)
 Frame = -2

Query: 476 RNLEFSFQPLISTIAVSTGTVLRRESAAKDMCLVTSVKPWRTFLGK 339
           R LEF F  LIST+A+S G             L  +V PW +  GK
Sbjct: 126 RKLEFIFVALISTMAISFGYEFVVMKPVLTKVLTGTVVPWCSGCGK 171


>Z54218-1|CAA90954.1|  315|Caenorhabditis elegans Hypothetical
           protein F37B12.1 protein.
          Length = 315

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 16/33 (48%), Positives = 18/33 (54%)
 Frame = -1

Query: 471 FGVFLPAFDLDHSSFHGYRLEKRVGCKRHVLGN 373
           F VFL    L  S F  Y L KR+  KR +LGN
Sbjct: 267 FTVFLSVSLLSLSIFLSYDLSKRLEMKRELLGN 299


>U88177-3|AAB42292.1|  191|Caenorhabditis elegans Hypothetical
           protein F53E10.6 protein.
          Length = 191

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 17/59 (28%), Positives = 31/59 (52%)
 Frame = +1

Query: 1   VDGVEGETGRAKAAQAVQHGARLKRKLQRRITRQALAEAKAIKEQINILVYVAEMVATD 177
           VDG  G+     A  A++   R K+K+ +++T++  +  K++KE    L  V   + TD
Sbjct: 38  VDGGAGDADETVAFPAIE---RRKKKVIKKLTKKEQSLKKSVKEYRIKLALVKPDITTD 93


>AF003151-19|AAK18922.1|  988|Caenorhabditis elegans Hypothetical
           protein D1007.7 protein.
          Length = 988

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 16/56 (28%), Positives = 23/56 (41%)
 Frame = +3

Query: 159 RNGGNGPSASLDKSQGAILVSKPT*TREPSPPRHARGVGRVADQGNREEIRASRQL 326
           R GG GP    +  +G +L       RE    R   G GR   + +R+  R   Q+
Sbjct: 804 RRGGGGPPFRPENGRGRLLDQSEMWNREQREMRGGGGAGRDGGREHRDYDRDRSQI 859


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.315    0.128    0.354 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,493,561
Number of Sequences: 27780
Number of extensions: 209132
Number of successful extensions: 605
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 605
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 892829112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)