Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_E23
         (483 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g62080.1 68418.m07791 protease inhibitor/seed storage/lipid t...    28   3.8  
At1g07705.1 68414.m00830 NOT2/NOT3/NOT5 family protein contains ...    27   6.6  
At3g51770.1 68416.m05677 tetratricopeptide repeat (TPR)-containi...    27   8.8  

>At5g62080.1 68418.m07791 protease inhibitor/seed storage/lipid
           transfer protein (LTP) family protein similar to
           tapetum-specific protein a9 precursor {Brassica napus}
           SP|Q05772; contains Pfam protease inhibitor/seed
           storage/LTP family domain PF00234; supported by
           full-length cDNA Ceres:27795
          Length = 95

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = +2

Query: 290 GKPRGNSCISSTTPTRTCLETYAKA*RLLPSTCLLQP 400
           G+P    C +  +  R CL    +A   LPS C L P
Sbjct: 52  GRPNSECCAALQSTNRDCLCNALRAATSLPSLCNLPP 88


>At1g07705.1 68414.m00830 NOT2/NOT3/NOT5 family protein contains
           Pfam PF04153: NOT2 / NOT3 / NOT5 family; similar to Rga
           (GI:1658504) [Drosophila melanogaster]
          Length = 444

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -3

Query: 307 ISSRFPWSATRPTPRAWRGGLGSRVQVGLETS 212
           I++ FP   +RP+    +G LGSR++ GL  S
Sbjct: 135 INNDFPQLTSRPSSAGSQGQLGSRLKQGLGIS 166


>At3g51770.1 68416.m05677 tetratricopeptide repeat (TPR)-containing
           protein contains Pfam profile PF00515: TPR Domain
          Length = 958

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 407 RESAAKDMCLVTSVKPWRTF 348
           RE A  D+CL T + P RT+
Sbjct: 857 REMAQSDLCLATQLDPLRTY 876


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.315    0.128    0.354 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,247,863
Number of Sequences: 28952
Number of extensions: 205764
Number of successful extensions: 564
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 564
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 829097472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)